harness_audit
Audits process completeness by verifying that the reasoning layer followed all contract rules: no fabricated IDs, coherence checks, consistent exclusions, and emits a pass/warn/fail scorecard.
Instructions
GOVERNANCE / process-completeness auditor (read-only, no identity judgement): reads the session ledger + workdir artifacts and checks that the reasoning layer actually HONORED metabo-idmapper's OWN contract — no fabricated ID, no mass-only (W) candidate used as primary, final_class↔confidence coherent, fuzzy (M2/M3) accepts carry formula/mass verification, locant/anomer-sensitive names re-checked, xenobiotic-exclusion applied consistently, origin↔class coherent (exogenous kept vs xenobiotic excluded), flagged auto-accepts reviewed, id-gap KEGG re-tried, every CALL has a rationale, no entry left pending, gem_crosswalk ran, and the stage-7 always-emit artifacts exist. Emits a per-check pass/warn/fail scorecard so 'rules defined but not followed' is caught. Changes nothing. Run LAST (after coverage_summary).
Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| workdir | Yes |