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get_bioactivity_aop

get_bioactivity_aop
Read-onlyIdempotent

Retrieve adverse outcome pathway mappings by specifying a lookup type (ToxCast AEID, event number, or Entrez Gene ID) and an identifier to link bioactivity data to AOPs.

Instructions

Retrieve adverse outcome pathway mappings

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
identifierYesIdentifier value matching the lookup type
lookup_typeYesAOP lookup type

Output Schema

TableJSON Schema
NameRequiredDescriptionDefault
dataYesAdverse outcome pathway mapping records returned from CompTox bioactivity crosswalk queries.

Schema Changelog

Changes observed during successful MCP inspections.

  1. First observedv0.3.0

TDQS

C2.6/5.0
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Annotations already declare readOnlyHint, idempotentHint, openWorldHint, and destructiveHint=false, so the safety profile is covered structurally. The description adds nothing beyond that – no note on lookup semantics, external dependency, or what the mapping entails.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

A single short sentence with no filler, appropriately front-loaded. Its problem is under-specification, not verbosity.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness2/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

An output schema exists so return values needn't be explained, but for a tool with a required enum-driven lookup the description leaves usage, lookup semantics, and sibling boundaries entirely unspecified. Incomplete for correct invocation.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 100% with both parameters documented and lookup_type carrying an enum, so the schema does the heavy lifting. The description adds no interpretation of identifier or lookup_type, so the baseline 3 is appropriate.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose3/5

Does the description clearly state what the tool does and how it differs from similar tools?

States a verb ('Retrieve') and resource ('adverse outcome pathway mappings'), so the basic purpose is legible. However, it offers no differentiation from sibling tools like build_aop_linkage_summary, which also concerns AOP data, leaving the agent to guess at the boundary.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

No when-to-use guidance, no prerequisites, and no mention of alternatives despite the presence of build_aop_linkage_summary and various AOP-related siblings. The identifier/lookup_type requirement that drives applicability is never surfaced in prose.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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