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Glama

Server Configuration

Describes the environment variables required to run the server.

NameRequiredDescriptionDefault
LOG_LEVELNoApplication log level.INFO
BYPASS_AUTHNoSet to 1 to disable auth (development only).0
CTX_API_KEYNoCompTox API key used for all downstream requests.
ENVIRONMENTNoControls defaults like permissive CORS.development
CTX_RETRY_BASENoBase sleep (seconds) used in exponential backoff.0.5
CTX_USE_LEGACYNoSet to 1 to use the legacy https://api-ccte.epa.gov endpoint.0
CTX_API_BASE_URLNoBase URL for CompTox API.https://comptox.epa.gov/ctx-api
CORS_ALLOW_ORIGINSNoComma-separated origins for HTTP transport. Defaults to * in development.
CTX_RETRY_ATTEMPTSNoNumber of retry attempts for transient errors.3
EPA_COMPTOX_API_KEYNoFallback CompTox API key if CTX_API_KEY is not set.
EPACOMP_MCP_METRICS_ENABLEDNoToggle /metrics endpoint exposure.1
EPACOMP_MCP_HANDSHAKE_TIMEOUT_SECONDSNoMinimum handshake timeout negotiated with WebSocket clients.30
EPACOMP_MCP_HEARTBEAT_TIMEOUT_SECONDSNoMinimum heartbeat timeout negotiated with WebSocket clients.120

Instructions

Guidance the server publishes about itself, which clients place ahead of the tool catalog so the model reads it before choosing anything.

This server publishes no instructions, or was last inspected before Glama recorded them.

Capabilities

Features and capabilities supported by this server

Protocol revision2025-11-25

CapabilityDetails
tools
{
  "listChanged": false
}
prompts
{
  "listChanged": false
}
resources
{
  "subscribe": false,
  "listChanged": false
}
experimental
{}

Tools

Functions exposed to the LLM to take actions

NameDescription
search_chemicalB

Search for chemicals by name, CAS-RN, or other identifiers

batch_search_chemicalC

Batch search for chemicals using a list of identifiers

resolve_chemical_identifierA

Resolve a chemical identifier deterministically without silently accepting ambiguous fuzzy matches

get_chemical_detailsC

Get detailed information about a chemical

batch_get_chemical_detailsC

Get detailed information about multiple chemicals

search_msreadyB

Search for chemicals by MS-ready properties

get_chemical_fate_summaryB

Retrieve environmental fate summary for a chemical

get_chemical_fate_detailsB

Retrieve detailed environmental fate data for a chemical

get_chemical_extra_dataC

Fetch extra chemical data (functional use, use cases, etc.)

opsin_convert_nameC

Convert a systematic name using OPSIN

indigo_convert_molfileC

Convert a molfile using Indigo toolkit endpoints

search_bioactivity_termsB

Search bioactivity terms by prefix, exact match, or substring

get_bioactivity_summary_by_dtxsidC

Fetch bioactivity summary data for a chemical

get_bioactivity_summary_by_aeidC

Fetch bioactivity summary data for an assay endpoint ID (AEID)

get_bioactivity_summary_by_tissueC

Fetch bioactivity summary data for a chemical in a specific tissue

get_bioactivity_dataB

Retrieve detailed bioactivity data for a single identifier

batch_get_bioactivity_dataB

Batch fetch bioactivity data for multiple identifiers

get_bioactivity_aedC

Retrieve Activity Exposure Distribution (AED) data for a chemical

batch_get_bioactivity_aedC

Batch retrieve AED data for multiple chemicals

get_bioactivity_assayB

Retrieve assay annotations or lists (by AEID, gene, single-concentration, or all)

batch_get_bioactivity_assay_annotationsC

Batch retrieve assay annotations for AEIDs

get_bioactivity_assay_countA

Return the total count of available assays

get_bioactivity_assay_chemicalsC

Get chemicals associated with an assay endpoint

get_bioactivity_aopC

Retrieve adverse outcome pathway mappings

get_bioactivity_analytical_qcB

Retrieve analytical QC data for a chemical

search_cpdatB

Search historical CPDat data (functional use, product use categories, or list presence) for chemicals

search_httkC

Search for high-throughput toxicokinetics (HTTK) data

get_cpdat_vocabularyB

Return CPDat controlled vocabulary values (functional use, product use categories, or list presence tags)

search_qsursC

Retrieve QSUR model functional-use probability predictions

search_exposuresB

Backwards-compatible exposure search across pathways/MMDB/SEEM datasets

get_seem_generalC

Fetch SEEM general exposure predictions

batch_get_seem_generalB

Batch fetch SEEM general exposure predictions

get_seem_demographicC

Fetch SEEM demographic exposure predictions

batch_get_seem_demographicB

Batch fetch SEEM demographic exposure predictions

get_exposure_product_dataC

Retrieve CPDat product data

batch_get_exposure_product_dataC

Batch fetch CPDat product data

list_exposure_product_pucC

List product use categories (PUC)

get_exposure_list_presenceC

Retrieve list presence data

batch_get_exposure_list_presenceC

Batch fetch list presence data

list_exposure_list_presence_tagsC

List list-presence tags

get_exposure_httkC

Retrieve HTTK data

batch_get_exposure_httkC

Batch fetch HTTK data

get_exposure_functional_useC

Retrieve reported functional use data

batch_get_exposure_functional_useC

Batch fetch reported functional use data

get_exposure_functional_use_probabilityB

Retrieve functional use probability predictions

list_exposure_functional_use_categoriesB

List functional use categories

get_exposure_ccd_pucC

Retrieve CCD Product Use Category data

get_exposure_ccd_production_volumeC

Retrieve CCD production volume data

get_exposure_ccd_monitoring_dataC

Retrieve CCD biomonitoring data

get_exposure_ccd_keywordsC

Retrieve CCD general use keywords

get_exposure_ccd_functional_useC

Retrieve CCD reported functional use data

get_exposure_ccd_chem_weight_fractionsC

Retrieve CCD chemical weight fractions data

get_exposure_mmdb_single_sample_by_mediumB

Retrieve MMDB single-sample data filtered by medium

get_exposure_mmdb_single_sample_by_dtxsidC

Retrieve MMDB single-sample data

list_exposure_mmdb_mediumsC

List MMDB medium categories

get_exposure_mmdb_aggregate_by_mediumC

Retrieve MMDB aggregate records filtered by medium

get_exposure_mmdb_aggregate_by_dtxsidC

Retrieve MMDB aggregate records

search_hazardB

Search for hazard data by DTXSID across ToxValDB, ToxRefDB, cancer, genetox, ADME/IVIVE, IRIS, PPRTV, or HAWC datasets.

batch_search_hazardC

Batch hazard lookup for multiple DTXSIDs for the selected dataset.

get_hazard_toxvalB

Retrieve full ToxValDB hazard data for a single chemical.

batch_get_hazard_toxvalC

Retrieve ToxValDB hazard data for multiple chemicals.

get_hazard_skin_eyeC

Retrieve skin and eye hazard data for a single chemical.

batch_get_hazard_skin_eyeA

Retrieve skin and eye hazard data for multiple chemicals.

get_hazard_cancer_summaryB

Retrieve cancer hazard summary for a single chemical.

batch_get_hazard_cancer_summaryB

Retrieve cancer hazard summary for multiple chemicals.

get_hazard_genetox_summaryC

Retrieve genotoxicity summary data for a chemical.

batch_get_hazard_genetox_summaryC

Retrieve genotoxicity summary data for multiple chemicals.

get_hazard_genetox_detailsC

Retrieve genotoxicity detailed data for a chemical.

batch_get_hazard_genetox_detailsC

Retrieve genotoxicity detailed data for multiple chemicals.

get_hazard_adme_iviveC

Retrieve ADME/IVIVE hazard data for a chemical.

get_hazard_pprtvC

Retrieve PPRTV hazard data for a chemical.

get_hazard_irisC

Retrieve IRIS hazard data for a chemical.

get_hazard_hawcB

Retrieve HAWC link mapper data for a chemical.

get_hazard_toxrefB

Retrieve ToxRefDB data (summary, data, effects, or observations) by DTXSID, study ID, or study type.

batch_get_hazard_toxrefB

Batch retrieve ToxRefDB data by DTXSID.

get_public_list_namesB

Get names of available public chemical lists

get_full_listB

Get all chemicals in a specific list

metadata_get_model_cardC

Retrieve CompTox model cards with optional filters and pagination

metadata_list_applicability_domainC

List applicability domain reference definitions

metadata_get_applicability_domainC

Fetch applicability domain configuration for a specific model

assemble_comptox_evidence_packC

Assemble a portable CompTox evidence pack combining identity, hazard, exposure, bioactivity, AOP linkage, and PBPK context slices.

build_aop_linkage_summaryC

Build a CompTox-side AOP linkage summary from bioactivity assay and AOP crosswalk data.

build_pbpk_context_bundleB

Build a CompTox-side PBPK context bundle from HTTK, ADME/IVIVE, exposure hints, and model-card references.

prioritize_risk_signalsB

Build a caveated screening-priority summary from bioactivity AED, SEEM exposure, HTTK context, MMDB, and CPDat use signals

get_contract_manifestB

Return a machine-readable inventory of the live public resources, tools, MCP response schemas, portable schemas, and suite boundary notes

Prompts

Interactive templates invoked by user choice

NameDescription

No prompts

Resources

Contextual data attached and managed by the client

NameDescription
chemicalAccess to chemical structures, nomenclature, IDs, and properties
bioactivityAccess to ToxCast/Tox21 bioactivity data, assays, models, and AOP crosswalks
exposureAccess to SEEM predictions, CPDat product data, HTTK, MMDB monitoring, and CCD datasets
hazardAccess to hazard datasets from the CTX APIs, including ToxValDB, ToxRefDB, cancer, genetox, ADME/IVIVE, IRIS, PPRTV, and HAWC link mappers.
chemical_listAccess to chemical lists and collections
cheminformaticsAccess to ToxPrint chemotypes and other cheminformatics tools
metadataModel cards, applicability domain definitions, and provenance metadata
interopCross-suite evidence packaging and handoff builders for AOP and PBPK consumers
prioritizationScreening-style risk prioritization summaries combining AED, exposure, and use signals
manifestMachine-readable public contract manifest for resources, tools, schemas, and boundary notes

TDQS

C2.7/5.0

Scored across 85 tools

Disambiguation2/5

Several tools target the same underlying resource with only subtle differences, such as search_httk vs get_exposure_httk, search_qsurs vs get_exposure_functional_use_probability, and search_exposures vs the many specific get_exposure_* tools. Batch variants are clearly labeled, but these overlapping exposure, HTTK, and functional-use endpoints make misselection likely.

Naming Consistency4/5

All names use snake_case and most follow a predictable verb_noun pattern with domain prefixes (get_bioactivity_*, get_hazard_*, get_exposure_*). Minor deviations exist, like metadata_get_model_card and opsin_convert_name where the domain/service prefix precedes the verb.

Tool Count1/5

85 tools is far beyond the 3-15 range for a well-scoped server and exceeds even a generous ceiling for a broad public-data API. Many batch and dataset-specific variants inflate the count, making the surface extremely heavy.

Completeness5/5

The surface covers chemical identity, bioactivity, exposure, hazard, metadata, public lists, and cross-domain aggregation workflows, with search/get/batch/list operations for most resources. No obvious gaps for the read-only CompTox domain.

Maintenance

ActivityMaintained
ResponsivenessNo issues