query_rnacentral
Search RNAcentral for RNA sequences by query, RNA type, taxonomy, source database, or secondary structure presence, and retrieve detailed metadata including Rfam, GO, and 2D structure annotations.
Instructions
Comprehensive search for RNA sequences using EBI Search and RNAcentral APIs. Combines text search filters with detailed metadata (Rfam, GO, 2D structure).
Args: query: Search term (e.g., "telomerase", "hsa-mir-126", "HOTAIR") rna_type: Filter by RNA type (e.g., "miRNA", "lncRNA", "tRNA") taxon: Taxon name or NCBI Taxonomy ID. Prefer scientific names (e.g. "Homo sapiens", "Mus musculus") over common names if available. expert_db: Source database (e.g., "miRBase", "GENCODE", "Ensembl") has_secondary_structure: Filter for RNAs with known 2D structure limit: Number of results to return (default 10, max 20)
Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| limit | No | ||
| query | Yes | ||
| taxon | No | ||
| rna_type | No | ||
| expert_db | No | ||
| has_secondary_structure | No |
Output Schema
| Name | Required | Description | Default |
|---|---|---|---|
| result | Yes |