export_sequences
Retrieve bulk RNA sequences by query and filters in FASTA or Parquet format for large-scale uses such as ML dataset generation.
Instructions
Export bulk RNA sequences matching a query in FASTA or Parquet format. Use this for large-scale data retrieval (e.g., ML dataset generation).
Args: query: Search term (e.g., "telomerase", "hsa-mir-126", "HOTAIR") rna_type: Filter by RNA type (e.g., "miRNA", "lncRNA", "tRNA") taxon: Taxon name or NCBI Taxonomy ID. expert_db: Source database (e.g., "miRBase", "GENCODE", "Ensembl") has_secondary_structure: Filter for RNAs with known 2D structure min_length: Minimum sequence length (nt) max_length: Maximum sequence length (nt) format: Output format ("fasta" or "parquet", default "fasta")
Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| query | Yes | ||
| taxon | No | ||
| format | No | fasta | |
| rna_type | No | ||
| expert_db | No | ||
| max_length | No | ||
| min_length | No | ||
| has_secondary_structure | No |
Output Schema
| Name | Required | Description | Default |
|---|---|---|---|
| result | Yes |