Related Servers

No user-submitted related servers found.

Related Servers

• MCP-GMX-VMD

  egtai

  A

  license

  -Not graded

  quality

  F

  maintenance

  Integrates GROMACS molecular dynamics simulations with VMD visualization, enabling setup, execution, analysis, and 3D visualization of molecular dynamics workflows through natural language.

  Updated a year ago (2025-06-03 08:48 UTC)

  21

  MIT

• ChimeraX MCP Server

  mahynotch

  A

  license

  A

  quality

  D

  maintenance

  Enables natural language control of UCSF ChimeraX for protein structure visualization, editing, and analysis through MCP clients.

  Updated 5 months ago (2026-04-02 17:54 UTC)

  39

  3

  MIT

• vmd-hydrate-mcp

  wjgoarxiv

  A

  license

  A

  quality

  A

  maintenance

  Drive VMD from any LLM — render GROMACS/LAMMPS trajectories and analyze clathrate-hydrate cages through the Model Context Protocol.

  Updated 2 months ago (2026-07-03 05:34 UTC)

  17

  MIT

• MCPymol

  chemrich

  A

  license

  C

  quality

  B

  maintenance

  A Model Context Protocol server that lets you drive PyMOL with natural language, enabling structure loading, analytical views, measurements, and protein exploration through AI assistants.

  Updated 9 days ago (2026-08-16 20:14 UTC)

  100

  15

  MIT

• Rosetta MCP

  MacromNex

  F

  license

  -Not graded

  quality

  D

  maintenance

  Enables protein modeling and design using the Rosetta suite via Docker, including structure refinement, mutation stability analysis, docking, and loop modeling through natural language commands.

  Updated 6 months ago (2026-02-23 07:10 UTC)

• MCP LAMMPS Server

  Chenghao-Wu

  A

  license

  -Not graded

  quality

  F

  maintenance

  A Model Context Protocol server that enables AI assistants to interact with LAMMPS for molecular dynamics simulations through natural language commands.

  Updated 8 months ago (2025-12-27 02:44 UTC)

  14

  Apache 2.0