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Glama

Server Configuration

Describes the environment variables required to run the server.

NameRequiredDescriptionDefault

No arguments

Instructions

Guidance the server publishes about itself, which clients place ahead of the tool catalog so the model reads it before choosing anything.

This server publishes no instructions, or was last inspected before Glama recorded them.

Capabilities

Features and capabilities supported by this server

Protocol revision2025-11-25

CapabilityDetails
tools
{}

Tools

Functions exposed to the LLM to take actions

NameDescription
map_identifiersC

Map protein identifiers to STRING IDs.

get_network_interactionsC

Retrieve STRING interaction edges.

get_functional_enrichmentC

Perform GO / pathway enrichment on a protein set.

get_functional_annotationC

Retrieve all functional annotations for proteins.

get_interaction_partnersC

Retrieve interaction partners for given proteins.

get_homologyB

Get homology information for proteins.

get_homology_bestC

Get best homology matches for proteins.

get_ppi_enrichmentC

Get protein-protein interaction enrichment statistics.

get_version_infoB

Return the current STRING database version.

get_network_imageC

Return URL of STRING network image

get_enrichment_figureC

Return URL of enrichment scatter figure

Prompts

Interactive templates invoked by user choice

NameDescription

No prompts

Resources

Contextual data attached and managed by the client

NameDescription

No resources

TDQS

B3.3/5.0

Scored across 11 tools

Disambiguation4/5

Most tools have clearly distinct purposes, such as get_functional_annotation for annotations and get_network_interactions for edges. However, get_homology and get_homology_best could be confused, as both retrieve homology information with only subtle differences in scope.

Naming Consistency5/5

All tools follow a consistent verb_noun pattern with 'get_' or 'map_' prefixes, such as get_enrichment_figure and map_identifiers. There are no deviations in naming conventions, making the set highly predictable and readable.

Tool Count5/5

With 11 tools, the count is well-scoped for a protein interaction and enrichment analysis server. Each tool appears to serve a specific, non-redundant function, fitting within the typical 3-15 tool range for such domains.

Completeness4/5

The tool set covers core protein analysis workflows, including enrichment, homology, interactions, and identifier mapping. A minor gap exists in lacking update or delete operations, but this is reasonable for a retrieval-focused database server, and agents can work around this.

Maintenance

ActivityInactive
ResponsivenessNo issues