get_compound_bioactivities
Retrieve bioassay results and activity data for a specific compound using its PubChem CID, with optional filtering by activity outcome (active, inactive, or inconclusive).
Instructions
Get all bioassay results and activities for a compound
Input Schema
TableJSON Schema
| Name | Required | Description | Default |
|---|---|---|---|
| activity_outcome | No | Filter by activity outcome (default: all) | |
| cid | Yes | PubChem Compound ID (CID) |
Implementation Reference
- src/index.ts:1148-1150 (handler)The handler function that implements the core logic for the 'get_compound_bioactivities' tool. It currently returns a placeholder message indicating the feature is not yet implemented.
private async handleGetCompoundBioactivities(args: any) { return { content: [{ type: 'text', text: JSON.stringify({ message: 'Bioactivity search not yet implemented', args }, null, 2) }] }; } - src/index.ts:784-785 (registration)Registration in the tool dispatcher switch statement that routes calls to the specific handler.
case 'get_compound_bioactivities': return await this.handleGetCompoundBioactivities(args); - src/index.ts:600-611 (schema)Tool registration entry in the ListTools response, including the name, description, and input schema definition.
{ name: 'get_compound_bioactivities', description: 'Get all bioassay results and activities for a compound', inputSchema: { type: 'object', properties: { cid: { type: ['number', 'string'], description: 'PubChem Compound ID (CID)' }, activity_outcome: { type: 'string', enum: ['active', 'inactive', 'inconclusive', 'all'], description: 'Filter by activity outcome (default: all)' }, }, required: ['cid'], }, },