get_compound_bioactivities
Retrieve bioassay results and activity data for chemical compounds from PubChem to analyze compound effects in biological tests.
Instructions
Get all bioassay results and activities for a compound
Input Schema
TableJSON Schema
| Name | Required | Description | Default |
|---|---|---|---|
| cid | Yes | PubChem Compound ID (CID) | |
| activity_outcome | No | Filter by activity outcome (default: all) |
Implementation Reference
- src/index.ts:1148-1150 (handler)The handler function that executes the 'get_compound_bioactivities' tool logic. Currently implemented as a placeholder indicating that full bioactivity search is not yet implemented.
private async handleGetCompoundBioactivities(args: any) { return { content: [{ type: 'text', text: JSON.stringify({ message: 'Bioactivity search not yet implemented', args }, null, 2) }] }; } - src/index.ts:603-610 (schema)Input schema definition for the 'get_compound_bioactivities' tool, specifying parameters like CID and optional activity outcome filter.
inputSchema: { type: 'object', properties: { cid: { type: ['number', 'string'], description: 'PubChem Compound ID (CID)' }, activity_outcome: { type: 'string', enum: ['active', 'inactive', 'inconclusive', 'all'], description: 'Filter by activity outcome (default: all)' }, }, required: ['cid'], }, - src/index.ts:784-785 (registration)Registration and dispatch case in the main CallToolRequestSchema switch statement that routes calls to the handler.
case 'get_compound_bioactivities': return await this.handleGetCompoundBioactivities(args); - src/index.ts:600-610 (registration)Tool registration entry in the ListToolsRequestSchema response, including name, description, and schema.
{ name: 'get_compound_bioactivities', description: 'Get all bioassay results and activities for a compound', inputSchema: { type: 'object', properties: { cid: { type: ['number', 'string'], description: 'PubChem Compound ID (CID)' }, activity_outcome: { type: 'string', enum: ['active', 'inactive', 'inconclusive', 'all'], description: 'Filter by activity outcome (default: all)' }, }, required: ['cid'], },