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Ensembl MCP Server

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    • A
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      A Model Context Protocol server providing LLMs with access to the Ensembl genomics database, enabling AI assistants to query gene information, sequences, variants, and other genomic data across multiple species.
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    • A
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      Enables looking up genes, fetching sequences, predicting variant consequences, finding orthologs, and cross-database xrefs via Ensembl REST API through MCP.
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    TDQS

    A3.5/5.0

    Scored across 19 tools

    Disambiguation5/5

    Every tool has a clearly distinct purpose with no ambiguity. For example, 'lookup_gene' retrieves detailed gene information, 'search_genes' finds genes by name or description, and 'get_transcripts' focuses on transcript structures, ensuring agents can easily differentiate between them.

    Naming Consistency5/5

    All tool names follow a consistent verb_noun pattern using snake_case, such as 'get_sequence', 'list_species', and 'search_genes'. This uniformity makes the toolset predictable and easy to navigate for agents.

    Tool Count5/5

    With 19 tools, the server is well-scoped for genomic data analysis, covering diverse operations like sequence fetching, variant analysis, and gene lookups. Each tool earns its place without feeling excessive or insufficient for the domain.

    Completeness5/5

    The toolset provides complete coverage for genomic workflows, including data retrieval (e.g., 'get_sequence'), analysis (e.g., 'get_variant_consequences'), and utilities (e.g., 'map_coordinates'). There are no obvious gaps, supporting comprehensive agent operations in this domain.

    Maintenance

    ActivityInactive
    ResponsivenessNo issues