Schema | Ensembl MCP Server

Ensembl MCP Server

Describes the environment variables required to run the server.

Name	Required	Description	Default
No arguments

Server capabilities have not been inspected yet.

Functions exposed to the LLM to take actions

Name	Description
lookup_geneC	Get detailed gene information by stable ID or symbol
get_transcriptsC	Get all transcripts for a gene with detailed structure
search_genesC	Search for genes by name, description, or identifier
get_sequenceC	Get DNA sequence for genomic coordinates or gene/transcript ID
get_cds_sequenceB	Get coding sequence (CDS) for a transcript
translate_sequenceC	Translate DNA sequence to protein sequence
get_homologsC	Find orthologous and paralogous genes across species
get_gene_treeC	Get phylogenetic tree for gene family
get_variantsC	Get genetic variants in a genomic region
get_variant_consequencesC	Predict consequences of variants on genes and transcripts
get_regulatory_featuresC	Get regulatory elements (enhancers, promoters, TFBS) in genomic region
get_motif_featuresC	Get transcription factor binding motifs in genomic region
get_xrefsC	Get external database cross-references for genes
map_coordinatesB	Convert coordinates between genome assemblies
list_speciesC	Get list of available species and assemblies
get_assembly_infoC	Get genome assembly information and statistics
get_karyotypeC	Get chromosome information and karyotype
batch_gene_lookupC	Look up multiple genes simultaneously
batch_sequence_fetchC	Fetch sequences for multiple regions or features

Interactive templates invoked by user choice

Name	Description
No prompts

Contextual data attached and managed by the client

Name	Description
No resources

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