Rosetta MCP Server
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TDQS
Scored across 19 tools
Each tool has a clearly distinct purpose. Tools with similar themes (e.g., documentation, translation) are differentiated by specific actions (help vs info vs search) or direction (biotite_to_rosetta vs rosetta_to_biotite). Descriptions include 'ALWAYS use this tool' cues that reduce ambiguity.
All tool names use snake_case and follow a predictable verb_noun pattern (e.g., check_pyrosetta, run_rosetta_scripts). Even longer names like translate_rosetta_script_to_biotite are consistent in style. The only slight deviation is biotite_to_rosetta which uses source_target format, but it's still clear and matches rosetta_to_biotite.
19 tools is appropriate for the complex Rosetta domain, covering installation, documentation, translation, scripting, scoring, and validation. Each tool serves a specific need without unnecessary overlap. The count allows comprehensive functionality while remaining manageable.
The tool set covers core workflows: setup, documentation, translation between Biotite and Rosetta, XML validation, and running RosettaScripts. Minor gaps exist: no direct PDB I/O tool (though PyRosetta can handle it) and no general Rosetta executable runner beyond rosetta_scripts. Overall, it is well-equipped for common tasks.