list_genark_genomes
Retrieve available genome assemblies from UCSC's GenArk database or verify if a specific genome exists for genomic analysis and research.
Instructions
List UCSC Genome Browser database genomes from assembly hub host (GenArk). Can also test for existence of a specific genome.
Input Schema
TableJSON Schema
| Name | Required | Description | Default |
|---|---|---|---|
| genome | No | Specific genome to test for existence (optional) | |
| max_items | No | Maximum number of items to return (default: 1000000) |
Implementation Reference
- ucsc-genome-mcp.py:362-368 (handler)Handler implementation for the 'list_genark_genomes' tool. It extracts parameters from arguments, maps 'max_items' to 'maxItemsOutput', builds the API URL for the /list/genarkGenomes endpoint, and fetches the data using make_api_request.elif name == "list_genark_genomes": params = { "genome": arguments.get("genome"), "maxItemsOutput": arguments.get("max_items") } url = build_api_url("/list/genarkGenomes", params) result = await make_api_request(url)
- ucsc-genome-mcp.py:113-129 (registration)Registration of the 'list_genark_genomes' tool in the list_tools() decorator, defining its name, description, and input schema.Tool( name="list_genark_genomes", description="List UCSC Genome Browser database genomes from assembly hub host (GenArk). Can also test for existence of a specific genome.", inputSchema={ "type": "object", "properties": { "genome": { "type": "string", "description": "Specific genome to test for existence (optional)" }, "max_items": { "type": "integer", "description": "Maximum number of items to return (default: 1000000)" } } } ),
- ucsc-genome-mcp.py:116-128 (schema)Input schema definition for the 'list_genark_genomes' tool, specifying parameters for genome (optional string) and max_items (optional integer).inputSchema={ "type": "object", "properties": { "genome": { "type": "string", "description": "Specific genome to test for existence (optional)" }, "max_items": { "type": "integer", "description": "Maximum number of items to return (default: 1000000)" } } }