Server Configuration
Describes the environment variables required to run the server.
| Name | Required | Description | Default |
|---|---|---|---|
No arguments | |||
Tools
Functions exposed to the LLM to take actions
| Name | Description |
|---|---|
| find_genome | Search for a genome in the UCSC browser using a search string. Supports advanced search with +word (force inclusion), -word (exclusion), and word* (wildcard). |
| list_public_hubs | List all available public track hubs in the UCSC Genome Browser. |
| list_ucsc_genomes | List all UCSC Genome Browser database genomes available on the database host. |
| list_genark_genomes | List UCSC Genome Browser database genomes from assembly hub host (GenArk). Can also test for existence of a specific genome. |
| list_hub_genomes | List all genomes available in a specified track or assembly hub. |
| list_files | List download files available for a specified UCSC genome assembly. |
| list_tracks | List all data tracks available in a specified hub or UCSC database genome. |
| list_chromosomes | List chromosomes in an assembly hub, track hub, or UCSC database genome. Optionally filter by specific track. |
| list_schema | List the schema (field definitions) for a specified data track. |
| get_sequence | Retrieve DNA sequence from a specified genome assembly. Can retrieve entire chromosome or specific coordinates. |
| get_track_data | Retrieve data from a specified track in a hub or UCSC database genome. Can be filtered by chromosome and coordinates. |
| search_genome | Search for matches within a UCSC Genome Browser genome assembly across tracks, help docs, and public hubs. |
Prompts
Interactive templates invoked by user choice
| Name | Description |
|---|---|
No prompts | |
Resources
Contextual data attached and managed by the client
| Name | Description |
|---|---|
No resources | |