ensembl_mapping
Convert genomic, cDNA, CDS, or protein coordinates between different systems or genome assemblies for species like human or mouse using specified feature IDs and mapping types.
Instructions
Map coordinates between different coordinate systems (genomic ↔ cDNA/CDS/protein) and between genome assemblies. Covers /map/* endpoints.
Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| coordinates | Yes | Coordinates to map: '100..200' for cDNA/CDS coords, or 'chr:start-end' for genomic (e.g., '100..300', '1..150', '17:7565096-7590856', 'X:1000000-2000000') | |
| feature_id | No | Feature ID (transcript/translation) for coordinate mapping (e.g., 'ENST00000288602', 'ENSP00000288602') | |
| mapping_type | Yes | Type of coordinate mapping | |
| source_assembly | No | Source assembly name (for assembly mapping) (e.g., 'GRCh37', 'GRCh38') | |
| species | No | Species name (e.g., 'homo_sapiens', 'mus_musculus') | homo_sapiens |
| target_assembly | No | Target assembly name (for assembly mapping) (e.g., 'GRCh38', 'GRCh37') |