NSAF MCP Server

# Neuro-Symbolic Autonomy Framework (NSAF) - Unified Requirements
# ================================================================
# Updated for 2025 security standards with latest secure versions

# Core Scientific Computing (Latest Secure Versions)
numpy>=2.3.5
scipy>=1.14.1
sympy>=1.13.3
networkx>=3.4.2

# Machine Learning & Deep Learning (Security Updates)
torch>=2.6.0  # CRITICAL: Fixes CVE-2025-32434 RCE vulnerability
tensorflow>=2.19.0  # Latest with Keras 3.11.4+ for CVE-2025-12058 fix
scikit-learn>=1.6.0

# Quantum Computing (Latest Secure Versions)
qiskit>=2.2.3  # Latest version with security patches
cirq>=1.6.0
pennylane>=0.40.0

# Distributed Computing
ray>=2.0.0

# Semantic Web & Knowledge Graphs
rdflib>=6.0.0

# Web Framework & API (Security Updated)
fastapi>=0.115.6  # Latest secure version
uvicorn>=0.32.1   # Latest with security fixes
websockets>=14.0  # Updated for security
pydantic>=2.10.3  # Latest stable version
pydantic[email]>=2.10.3
python-multipart>=0.0.20  # Updated version

# Database (Security Updated)
sqlalchemy>=2.0.36  # Latest secure version
psycopg2-binary>=2.10.0  # Updated for security
redis>=5.2.1  # Latest version

# Authentication & Security (Critical Updates)
python-jose[cryptography]>=3.3.1  # Security patches
passlib[bcrypt]>=1.7.5  # Latest secure version
email-validator>=2.2.0  # Updated validation

# HTTP Clients (Security Updated)
aiohttp>=3.13.2  # Critical security updates for HTTP handling
httpx>=0.28.1    # Latest with security fixes
requests>=2.32.3  # Security updates

# Data Processing (Updated)
pandas>=2.3.0      # Latest with performance improvements
matplotlib>=3.10.0  # Latest stable version
tqdm>=4.67.1       # Updated progress bars

# Configuration & Environment (Security Updated)
pyyaml>=6.0.2      # Security fixes for YAML parsing
python-dotenv>=1.0.2  # Latest environment management

# Optimization (Updated)
pyomo>=6.8.2      # Latest optimization toolkit
optuna>=4.1.0     # Latest hyperparameter optimization

# Testing & Development (Updated)
pytest>=8.3.4           # Latest testing framework
pytest-asyncio>=0.25.0  # Latest async testing support
black>=24.12.0          # Latest code formatter
isort>=5.13.5           # Latest import sorting
mypy>=1.14.0           # Latest type checker
flake8>=7.1.1          # Latest linter

# Documentation
sphinx>=4.2.0
sphinx-rtd-theme>=1.0.0
myst-parser>=0.15.2

# Additional Utilities
jinja2==3.1.3
markdown==3.5

# MCP Protocol Support
# (Using simplified implementation, no additional deps needed)