mcp_tools_definition.json•5.95 kB
{
"name": "Adaptive Graph of Thoughts",
"description": "Advanced scientific reasoning through graph-based analysis with evidence integration",
"version": "0.1.0",
"tools": [
{
"name": "scientific_reasoning_query",
"description": "Perform advanced scientific reasoning using the Adaptive Graph of Thoughts framework",
"inputSchema": {
"type": "object",
"properties": {
"query": {
"type": "string",
"description": "The scientific question or research query to analyze",
"maxLength": 2000
},
"include_reasoning_trace": {
"type": "boolean",
"description": "Include detailed reasoning trace in the response",
"default": true
},
"include_graph_state": {
"type": "boolean",
"description": "Include the full graph state representation",
"default": true
},
"max_nodes_in_response_graph": {
"type": "integer",
"description": "Maximum nodes in response graph",
"default": 50,
"minimum": 0
},
"output_detail_level": {
"type": "string",
"enum": ["summary", "detailed"],
"default": "summary"
},
"session_id": {
"type": "string",
"description": "Optional session ID for tracking"
}
},
"required": ["query"]
}
},
{
"name": "analyze_research_hypothesis",
"description": "Analyze and evaluate research hypotheses with confidence scoring",
"inputSchema": {
"type": "object",
"properties": {
"hypothesis": {
"type": "string",
"description": "The research hypothesis to analyze"
},
"research_domain": {
"type": "string",
"description": "Scientific domain (e.g., 'cancer biology', 'microbiome')"
},
"evidence_sources": {
"type": "array",
"items": {
"type": "string",
"enum": ["pubmed", "google_scholar", "exa_search"]
},
"default": ["pubmed", "google_scholar"]
}
},
"required": ["hypothesis"]
}
},
{
"name": "explore_scientific_relationships",
"description": "Explore relationships between scientific concepts using graph analysis",
"inputSchema": {
"type": "object",
"properties": {
"primary_concept": {
"type": "string",
"description": "Primary scientific concept to explore"
},
"related_concepts": {
"type": "array",
"items": {"type": "string"},
"description": "Related concepts to analyze"
},
"relationship_types": {
"type": "array",
"items": {
"type": "string",
"enum": ["causal", "correlational", "mechanistic", "temporal", "hierarchical"]
},
"default": ["causal", "correlational"]
},
"depth_level": {
"type": "integer",
"minimum": 1,
"maximum": 5,
"default": 3
}
},
"required": ["primary_concept"]
}
},
{
"name": "validate_scientific_claims",
"description": "Validate scientific claims against existing evidence",
"inputSchema": {
"type": "object",
"properties": {
"claim": {
"type": "string",
"description": "Scientific claim to validate"
},
"evidence_threshold": {
"type": "number",
"minimum": 0.0,
"maximum": 1.0,
"default": 0.7
},
"validation_criteria": {
"type": "array",
"items": {
"type": "string",
"enum": ["reproducibility", "peer_review", "sample_size", "methodology", "statistical_significance"]
},
"default": ["peer_review", "methodology", "statistical_significance"]
},
"include_counterevidence": {
"type": "boolean",
"default": true
}
},
"required": ["claim"]
}
}
],
"resources": [
{
"uri": "graph://current-session",
"name": "Current Session Graph State",
"description": "Access to current reasoning session's graph state"
},
{
"uri": "evidence://pubmed",
"name": "PubMed Evidence Database",
"description": "Access to PubMed scientific literature"
},
{
"uri": "evidence://scholar",
"name": "Google Scholar Database",
"description": "Access to Google Scholar academic literature"
},
{
"uri": "evidence://exa",
"name": "Exa Search Database",
"description": "Access to Exa Search web-based scientific content"
}
],
"prompts": [
{
"name": "analyze_complex_research_question",
"description": "Analyze complex, multi-faceted research questions",
"arguments": [
{
"name": "research_question",
"description": "The complex research question to analyze",
"required": true
},
{
"name": "discipline",
"description": "Primary scientific discipline",
"required": false
}
]
},
{
"name": "synthesize_literature_findings",
"description": "Synthesize findings from multiple research papers",
"arguments": [
{
"name": "papers_summary",
"description": "Summary of key papers or findings",
"required": true
},
{
"name": "synthesis_focus",
"description": "Focus area for synthesis",
"required": false
}
]
}
]
}