gRNAde MCP Server

{ "_description": "Configuration for RNA Structure Analysis", "_source": "Extracted from examples/use_case_3_structure_analysis_minimal.py", "analysis": { "include_pseudoknots": true, "validate_structure": true, "include_statistics": true, "include_stems": true, "include_loops": true }, "prediction": { "method": "simple_heuristic", "note": "For real predictions, integrate ViennaRNA RNAfold or EternaFold" }, "validation": { "allowed_brackets": ["()", "[]", "{}", "<>"], "allow_pseudoknots": true, "strict_pairing": false }, "output": { "format": "json", "include_metadata": true, "include_summary": true, "verbose": true }, "processing": { "min_stem_length": 2, "min_loop_length": 3 } }