gRNAde MCP Server

{ "_description": "Configuration for RNA Inverse Design using gRNAde", "_source": "Extracted from examples/use_case_1_rna_inverse_design_fixed.py", "model": { "checkpoint": "gRNAde_drop3d@0.75_maxlen@500.h5", "device": "cpu", "num_layers": 20, "model_type": "2d" }, "generation": { "total_samples": 1000, "n_samples": 32, "n_pass": 100, "temperature_min": 0.1, "temperature_max": 1.0, "pass_threshold": 80 }, "reproducibility": { "seed": 42 }, "output": { "format": "csv", "include_metadata": true, "timestamp_files": true }, "modes": { "2d": { "description": "Design based on secondary structure constraints", "required_inputs": ["secondary_structure"], "optional_inputs": ["partial_seq"] }, "3d": { "description": "Design based on 3D structural constraints", "required_inputs": ["pdb_file"], "optional_inputs": ["secondary_structure", "partial_seq"] } } }