Server Configuration
Describes the environment variables required to run the server.
Name | Required | Description | Default |
---|---|---|---|
No arguments |
Schema
Prompts
Interactive templates invoked by user choice
Name | Description |
---|---|
No prompts |
Resources
Contextual data attached and managed by the client
Name | Description |
---|---|
No resources |
Tools
Functions exposed to the LLM to take actions
Name | Description |
---|---|
search_pathways | Search for biological pathways by name, description, or keywords |
get_pathway_details | Get comprehensive information about a specific pathway |
find_pathways_by_gene | Find all pathways containing a specific gene or protein |
find_pathways_by_disease | Find disease-associated pathways and mechanisms |
get_pathway_hierarchy | Get hierarchical structure and parent/child relationships for a pathway |
get_pathway_participants | Get all molecules (proteins, genes, compounds) participating in a pathway |
get_pathway_reactions | Get all biochemical reactions within a pathway |
get_protein_interactions | Get protein-protein interactions within pathways |