search_by_subcellular_location

Search for proteins based on their subcellular localization within the Human Protein Atlas. Specify a compartment (e.g., nucleus or mitochondria) and filter by reliability to retrieve accurate results in JSON or TSV format.

Instructions

Find proteins localized to specific subcellular compartments

Input Schema

Name	Required	Description
`format`	No	Output format (default: json)
`location`	Yes	Subcellular location (e.g., nucleus, mitochondria, cytosol)
`maxResults`	No	Maximum number of results (1-10000, default: 100)
`reliability`	No	Reliability filter

Input Schema (JSON Schema)

{
  "properties": {
    "format": {
      "description": "Output format (default: json)",
      "enum": [
        "json",
        "tsv"
      ],
      "type": "string"
    },
    "location": {
      "description": "Subcellular location (e.g., nucleus, mitochondria, cytosol)",
      "type": "string"
    },
    "maxResults": {
      "description": "Maximum number of results (1-10000, default: 100)",
      "maximum": 10000,
      "minimum": 1,
      "type": "number"
    },
    "reliability": {
      "description": "Reliability filter",
      "enum": [
        "approved",
        "enhanced",
        "supported",
        "uncertain"
      ],
      "type": "string"
    }
  },
  "required": [
    "location"
  ],
  "type": "object"
}

ProteinAtlas MCP Server

search_by_subcellular_location

Instructions

Input Schema

Input Schema (JSON Schema)

Other Tools from ProteinAtlas MCP Server

Related Tools

MCP directory API