Server Configuration
Describes the environment variables required to run the server.
Name | Required | Description | Default |
---|---|---|---|
No arguments |
Schema
Prompts
Interactive templates invoked by user choice
Name | Description |
---|---|
No prompts |
Resources
Contextual data attached and managed by the client
Name | Description |
---|---|
No resources |
Tools
Functions exposed to the LLM to take actions
Name | Description |
---|---|
search_proteins | Search Human Protein Atlas for proteins by name, gene symbol, or description |
get_protein_info | Get detailed information for a specific protein by gene symbol |
get_protein_by_ensembl | Get protein information using Ensembl gene ID |
get_tissue_expression | Get tissue-specific expression data for a protein |
search_by_tissue | Find proteins highly expressed in specific tissues |
get_blood_expression | Get blood cell expression data for a protein |
get_brain_expression | Get brain region expression data for a protein |
get_subcellular_location | Get subcellular localization data for a protein |
search_by_subcellular_location | Find proteins localized to specific subcellular compartments |
get_pathology_data | Get cancer and pathology data for a protein |
search_cancer_markers | Find proteins associated with specific cancers or with prognostic value |
get_antibody_info | Get antibody validation and staining information for a protein |
advanced_search | Perform advanced search with multiple filters and criteria |
batch_protein_lookup | Look up multiple proteins simultaneously |
compare_expression_profiles | Compare expression profiles between multiple proteins |
get_protein_classes | Get protein classification and functional annotation data |