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Glama

ProteinAtlas MCP Server

Server Configuration

Describes the environment variables required to run the server.

NameRequiredDescriptionDefault

No arguments

Schema

Prompts

Interactive templates invoked by user choice

NameDescription

No prompts

Resources

Contextual data attached and managed by the client

NameDescription

No resources

Tools

Functions exposed to the LLM to take actions

NameDescription
search_proteins

Search Human Protein Atlas for proteins by name, gene symbol, or description

get_protein_info

Get detailed information for a specific protein by gene symbol

get_protein_by_ensembl

Get protein information using Ensembl gene ID

get_tissue_expression

Get tissue-specific expression data for a protein

search_by_tissue

Find proteins highly expressed in specific tissues

get_blood_expression

Get blood cell expression data for a protein

get_brain_expression

Get brain region expression data for a protein

get_subcellular_location

Get subcellular localization data for a protein

search_by_subcellular_location

Find proteins localized to specific subcellular compartments

get_pathology_data

Get cancer and pathology data for a protein

search_cancer_markers

Find proteins associated with specific cancers or with prognostic value

get_antibody_info

Get antibody validation and staining information for a protein

advanced_search

Perform advanced search with multiple filters and criteria

batch_protein_lookup

Look up multiple proteins simultaneously

compare_expression_profiles

Compare expression profiles between multiple proteins

get_protein_classes

Get protein classification and functional annotation data

MCP directory API

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