Server Configuration
Describes the environment variables required to run the server.
| Name | Required | Description | Default |
|---|---|---|---|
No arguments | |||
Schema
Prompts
Interactive templates invoked by user choice
| Name | Description |
|---|---|
No prompts | |
Resources
Contextual data attached and managed by the client
| Name | Description |
|---|---|
No resources | |
Tools
Functions exposed to the LLM to take actions
| Name | Description |
|---|---|
| search_proteins | Search Human Protein Atlas for proteins by name, gene symbol, or description |
| get_protein_info | Get detailed information for a specific protein by gene symbol |
| get_protein_by_ensembl | Get protein information using Ensembl gene ID |
| get_tissue_expression | Get tissue-specific expression data for a protein |
| search_by_tissue | Find proteins highly expressed in specific tissues |
| get_blood_expression | Get blood cell expression data for a protein |
| get_brain_expression | Get brain region expression data for a protein |
| get_subcellular_location | Get subcellular localization data for a protein |
| search_by_subcellular_location | Find proteins localized to specific subcellular compartments |
| get_pathology_data | Get cancer and pathology data for a protein |
| search_cancer_markers | Find proteins associated with specific cancers or with prognostic value |
| get_antibody_info | Get antibody validation and staining information for a protein |
| advanced_search | Perform advanced search with multiple filters and criteria |
| batch_protein_lookup | Look up multiple proteins simultaneously |
| compare_expression_profiles | Compare expression profiles between multiple proteins |
| get_protein_classes | Get protein classification and functional annotation data |