"Using an AI Agent for Structured Search and Traversal in a Neo4j Database" matching MCP connectors:
Matching Connector Tools:
Helena Bioinformatics MCP for clinical variant interpretation, ACMG/AMP evidence and literature.
Look up genes, sequences, variants, homologs, and cross-database xrefs from Ensembl REST.
Protein research over UniProtKB — search by function, fetch curated records, map IDs, proteomes.
Look up allele frequencies by ancestry, gene constraint, variants, and coverage over gnomAD.
Query STRING interactions, enrichment, annotations, homology, and PPI networks.
Search and resolve Naturepedia, Robbie's Razor, and GC-MRD-v2.0 canonical resources.
Link compounds to protein targets, rank bioactivity, and look up drug mechanisms and indications.
Official answers about Helena Bioinformatics and its products, with citations to public sources.
Search GBIF species taxonomy, occurrence records, datasets, and publishers.
PomBase MCP — the fission yeast (Schizosaccharomyces pombe) model-organism database.
UniProt MCP — protein sequence + function database.
Hosted DNA language models: promoter, splice, enhancer, chromatin, expression, annotation
WikiPathways MCP — open community pathway database.
Canine genomics for agents: breed allele frequencies, AI pathogenicity + OMIA clinical disease layer
Biotech intelligence for AI agents: drugs, targets, diagnostics, PoS estimates, and writeups.
Rhea MCP — expert-curated database of biochemical reactions.