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Scientific plotting for bioinformatics with about 160 free modules. Anonymous access supported.
Run protein folding, docking, design and sequence analysis tools, and read their results.
Official answers about Helena Bioinformatics and its products, with citations to public sources.
UCSC Genome Browser REST API — reference genome assemblies for ~250 species, the annotation tracks…
QuickGO (EBI) MCP — Gene Ontology browser.
UniProt MCP — protein sequence + function database.
IntAct (EBI) molecular-interaction database MCP. Keyless.
Rhea MCP — expert-curated database of biochemical reactions.
PubTator 3 MCP — biomedical entity search, literature search with entity highlighting, and…
EBI PRIDE Archive MCP — proteomics (mass-spectrometry) data repository. Keyless. Wraps the public…
PomBase MCP — the fission yeast (Schizosaccharomyces pombe) model-organism database.
SGD (Saccharomyces Genome Database) MCP.
NCBI Datasets — the US National Library of Medicine's genome, gene and taxonomy reference service…
NCI Thesaurus concepts and the other cancer-research vocabularies served by NCI Enterprise…
Human Protein Atlas (HPA) MCP — keyless.
KEGG REST MCP — Kyoto Encyclopedia of Genes and Genomes.
UMLS MCP — wraps the NLM UMLS Terminology Services REST API (uts-ws.nlm.nih.gov/rest)
PDBe (Protein Data Bank in Europe, EBI) MCP.
MyVariant.info MCP. Aggregated human genetic-variant annotation: dbSNP, ClinVar clinical…
Mondo — condition-string resolver onto the Mondo Disease Ontology.
g:Profiler (University of Tartu) — functional enrichment analysis for a gene list against GO…
RCSB PDB MCP — experimentally determined macromolecular structures.
European Nucleotide Archive (ENA) — EMBL-EBI's public record of raw sequencing runs, assemblies…
dbSNP refSNP records and HGVS/SPDI/rsID normalization for human genetic variants, from NCBI…
MGnify — EMBL-EBI's metagenomics resource: public microbiome studies, the biome vocabulary they…
MetaboLights MCP — EBI's metabolomics study repository.
InterPro MCP (EBI) — protein family / domain / functional-site classification.
CATNAP (Compile, Analyze, and Tally Neutralizing Antibody Panels) + the LANL HIV Molecular…