"How to run Python code" matching MCP connectors:

Link compounds to protein targets, rank bioactivity, and look up drug mechanisms and indications.

Official answers about Helena Bioinformatics and its products, with citations to public sources.

EBI PRIDE Archive MCP — proteomics (mass-spectrometry) data repository.

MyVariant.info MCP.

InterPro MCP (EBI) — protein family / domain / functional-site classification.

Human Protein Atlas (HPA) MCP — keyless.

PomBase MCP — the fission yeast (Schizosaccharomyces pombe) model-organism database.

RCSB PDB MCP — experimentally determined macromolecular structures.

Monarch biomedical knowledge graph — diseases, phenotypes, genes, variants

EBI Expression Atlas MCP.

UniProt MCP — protein sequence + function database.

GWAS Catalog (EBI/NHGRI) MCP — curated catalog of genome-wide association studies.

Ensembl REST — vertebrate genomes, sequences, comparative genomics, variation

Bioregistry — meta-registry of biomedical identifier prefixes

Broad Institute gnomAD genomic variant database (GraphQL)

ChEMBL MCP — drug discovery database (EBI).

WikiPathways MCP — open community pathway database.

MetaboLights MCP — EBI's metabolomics study repository.

GTEx — Genotype-Tissue Expression human gene-expression atlas

AlphaFold DB MCP — predicted protein structures.