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Official answers about Helena Bioinformatics and its products, with citations to public sources.
Link compounds to protein targets, rank bioactivity, and look up drug mechanisms and indications.
Gene expression experiments and the brain structure ontology from the Allen Institute's Brain…
AlphaFold DB MCP — predicted protein structures.
g:Profiler (University of Tartu) — functional enrichment analysis for a gene list against GO…
CATNAP (Compile, Analyze, and Tally Neutralizing Antibody Panels) + the
NCI Thesaurus concepts and the other cancer-research vocabularies served by NCI Enterprise…
MGnify — EMBL-EBI's metagenomics resource: public microbiome studies, the biome vocabulary they…
RCSB PDB MCP — experimentally determined macromolecular structures.
CIViC — Clinical Interpretation of Variants in Cancer.
DrugBank MCP — wraps the DrugBank Clinical API (api.drugbank.com)
cBioPortal MCP — cancer genomics portal.
UMLS MCP — wraps the NLM UMLS Terminology Services REST API (uts-ws.nlm.nih.gov/rest)
A unified biomedical graph database that integrates 50+ primary data sources — genes, proteins, compounds, diseases, pathways, and clinical data — into a single queryable graph with billions of cross-reference edges. Its native MCP server gives LLMs direct access to structured, authoritative biomedical data, complementing their reasoning with reliable identifiers and up-to-date database content.
MyVariant.info MCP. Aggregated human genetic-variant annotation: dbSNP, ClinVar clinical…
GWAS Catalog (EBI/NHGRI) MCP — curated catalog of genome-wide association studies.
PubTator 3 MCP — biomedical entity search, literature search with entity
PDBe (Protein Data Bank in Europe, EBI) MCP.
Mondo — condition-string resolver onto the Mondo Disease Ontology.
