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Official answers about Helena Bioinformatics and its products, with citations to public sources.
Link compounds to protein targets, rank bioactivity, and look up drug mechanisms and indications.
Query CAN-IMMUNE: cancer neoantigen mutations, peptides, cell lines, MHC-I binding. Read-only.
A unified biomedical graph database that integrates 50+ primary data sources — genes, proteins, compounds, diseases, pathways, and clinical data — into a single queryable graph with billions of cross-reference edges. Its native MCP server gives LLMs direct access to structured, authoritative biomedical data, complementing their reasoning with reliable identifiers and up-to-date database content.
Mondo — condition-string resolver onto the Mondo Disease Ontology.
IntAct (EBI) molecular-interaction database MCP. Keyless.
NCI CACTUS Chemical Identifier Resolver MCP.
BOLD Systems (Barcode of Life Data System, University of Guelph) — the global DNA barcode…
SGD (Saccharomyces Genome Database) MCP.
NCI Thesaurus concepts and the other cancer-research vocabularies served by NCI Enterprise…
CIViC — Clinical Interpretation of Variants in Cancer.
BioModels — the public repository of curated, executable mathematical models of biological systems…
Rhea MCP — expert-curated database of biochemical reactions.
Human Protein Atlas (HPA) MCP — keyless.
EBI PRIDE Archive MCP — proteomics (mass-spectrometry) data repository.
PomBase MCP — the fission yeast (Schizosaccharomyces pombe) model-organism database.
MGnify — EMBL-EBI's metagenomics resource: public microbiome studies, the biome vocabulary they…
MetaboLights MCP — EBI's metabolomics study repository.
KEGG REST MCP — Kyoto Encyclopedia of Genes and Genomes.
