"A database that can be operated or managed" matching MCP connectors:
GET /v1/connectors — MCP directory API referenceMatching Connector Tools:
Search biomedical papers, inspect publication records, and traverse citation or semantic graphs.
Look up genes, sequences, variants, homologs, and cross-database xrefs from Ensembl REST.
PomBase MCP — the fission yeast (Schizosaccharomyces pombe) model-organism database.
UniProt MCP — protein sequence + function database.
ChEMBL MCP — drug discovery database (EBI).
WikiPathways MCP — open community pathway database.
Broad Institute gnomAD genomic variant database (GraphQL)
Query STRING interactions, enrichment, annotations, homology, and PPI networks.
Query CAN-IMMUNE: cancer neoantigen mutations, peptides, cell lines, MHC-I binding. Read-only.
Reactome biological pathway database
IntAct (EBI) molecular-interaction database MCP. Keyless.
A unified biomedical graph database that integrates 50+ primary data sources — genes, proteins, compounds, diseases, pathways, and clinical data — into a single queryable graph with billions of cross-reference edges. Its native MCP server gives LLMs direct access to structured, authoritative biomedical data, complementing their reasoning with reliable identifiers and up-to-date database content.
Rhea MCP — expert-curated database of biochemical reactions.
SGD (Saccharomyces Genome Database) MCP.
Serves the user's personal DNA wellness report to their AI: caffeine response, sleep timing, training, nutrient absorption. Built from a hand-checked evidence base (GWAS Catalog, PharmGKB); every finding states its effect size and links to its source paper. No disease risk scores. The raw DNA file is parsed in the user's browser and never uploaded.
