"A FastAPI server for interacting with the GitHub API for file operations and repository management" matching MCP connectors:
Matching Connector Tools:
Helena Bioinformatics MCP for clinical variant interpretation, ACMG/AMP evidence and literature.
Look up genes, sequences, variants, homologs, and cross-database xrefs from Ensembl REST.
Protein research over UniProtKB — search by function, fetch curated records, map IDs, proteomes.
Look up allele frequencies by ancestry, gene constraint, variants, and coverage over gnomAD.
Query STRING interactions, enrichment, annotations, homology, and PPI networks.
Search and resolve Naturepedia, Robbie's Razor, and GC-MRD-v2.0 canonical resources.
Link compounds to protein targets, rank bioactivity, and look up drug mechanisms and indications.
Official answers about Helena Bioinformatics and its products, with citations to public sources.
Search GBIF species taxonomy, occurrence records, datasets, and publishers.
EBI PRIDE Archive MCP — proteomics (mass-spectrometry) data repository.
PomBase MCP — the fission yeast (Schizosaccharomyces pombe) model-organism database.
MetaboLights MCP — EBI's metabolomics study repository.
Hosted DNA/RNA/protein tools: primers, oligos, PCR, cloning, CRISPR, alignment, batch & pipelines.
Canine genomics for agents: breed allele frequencies, AI pathogenicity + OMIA clinical disease layer
Biotech intelligence for AI agents: drugs, targets, diagnostics, PoS estimates, and writeups.
Biomedical data: compounds, drug info, and molecular targets
Biotech rNPV/PoS engine for AI agents. Signed exports, evidence register, asset landscape.
A unified biomedical graph database that integrates 50+ primary data sources — genes, proteins, compounds, diseases, pathways, and clinical data — into a single queryable graph with billions of cross-reference edges. Its native MCP server gives LLMs direct access to structured, authoritative biomedical data, complementing their reasoning with reliable identifiers and up-to-date database content.
Chemical molecular intelligence platform covering compound search, structure analysis, physicochemical property retrieval, and molecular interaction profiling.