"Searching PubMed references and formatting them in Markdown" matching MCP tools:

• save_freeform_reportA

  Valuein — SEC EDGAR Fundamentals & Smart-Money DataA

  Save free-form markdown (e.g. a chat synthesis) as a DRAFT report you can refine in the editor and export to Word/PDF. Unlike `create_report` (which computes a structured reverse_dcf or thesis report), this accepts raw markdown and splits it into sections. PASS `citations` with the fact_ids behind the figures you wrote — without them every number in the report reads as unsourced and the report can never be signed off. Tier: sample rejected (reports are per-author state). Idempotency-key → stable report id.

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• iterate_art_directionA

  UwearA

  Queue feedback-driven revision of an existing ArtDirection without resending its markdown. Existing authoring references are included automatically. Use save=false for a reviewable draft, or save=true to update the same company ArtDirection with stale-edit protection. System ArtDirections support drafts only. Poll get_art_direction_authoring_job for the result.

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• render_markdownA

  makespdfA

  Render GitHub-flavored markdown to a real PDF (PDF/A-2A + PDF/UA-1 dual-compliant, tagged). **BILLED - consumes credits at the rate of 1 credit per 10 pages.** Returns JSON metadata (pageCount, creditsDeducted, creditsRemaining, artifactId) plus the PDF bytes as an embedded base64 resource. On the free plan the PDF is watermarked; paid plans render clean. Mirrors POST /api/v1/md. Run `validate_markdown` first - it is free and catches heading-hierarchy and alt-text problems before you pay to render them. There is no free markdown preview: markdown needs no layout iteration, so this is the only markdown render tool.

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• vulnerability_infoA

  ZEN SecDBA

  Get detailed information about a specific CVE. ## What this tool does Retrieves the full vulnerability record for a CVE from SecDB, including: - official description and summary - CVSS metrics (all versions available) - EPSS metadata (if present) - affected products and versions - vendor/security advisories - references and upstream sources - weakness classification (CWE) - exploit and patch information (if included in the record) All information is returned in a structured Markdown format suitable for direct display. ## When to use this tool Use this tool when the user asks: - "Give me details about CVE-XYZ." - "Which products are affected by this vulnerability?" - "Show me advisories or references for this CVE." - "Explain what this vulnerability is and how serious it is." This tool is ideal for **deep inspection of a single vulnerability**. For multiple CVEs, call the tool once per CVE. ## Inputs - **cve_id**: valid CVE identifier (`CVE-YYYY-NNNNN`). ## Outputs Markdown-formatted vulnerability information including: - detailed description - severity metrics (CVSS, vectors) - affected products list - advisory list - references - weakness (CWE) details - additional structured metadata from SecDB ## LLM usage guidelines - Always prefer this tool when the user needs factual information about a specific CVE. - If multiple CVEs are mentioned, call the tool once per CVE. - Combine with: - **`vulnerability_score`** - to enrich output with numerical CVSS/EPSS metrics - **`sightings_search`** - to check real-world exploitation, PoCs, plugins, advisories - **`ssvc_calculator`** - to compute prioritization based on the vulnerability data - Do not hallucinate product lists, advisories, or details—use what the tool returns.

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• format_jsonA

  IA-QA — 130+ QA & Dev Tools for AI AgentsB

  Validate and pretty-print a string that is ALREADY valid JSON. Strict by design — it is a validity gate: valid JSON comes back formatted, anything else is rejected with the exact parse error. It never repairs, completes, or guesses. NOT for: plain text or prose (will fail), JSON embedded in markdown/prose (use extract_json_from_text first), JS objects (JSON.stringify them first), YAML (use yaml_to_json).

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• rehost_imagesA

  vibedeployA

  Download the external images a site references (e.g. from the old site it was rebuilt from), store them on this VibeDeploy site under assets/img/, and rewrite the HTML <img> references to local paths so the site no longer depends on the original. Call this once AFTER deploying a site rebuilt with the Website Converter. Auto-detects the external image URLs from the site's own HTML; downloads are SSRF-guarded, size/count/time capped, and applied atomically (patch mode). Images already hosted on vibedeploy.be are skipped.

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  Destructive

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• install_moduleA

  FlowCastleA

  Install an exact marketplace module version into an application and create any missing installed-template actions. Requires the manage_automation permission. Call get_module_catalog first to select the module and version, then get_module_details after installation to inspect setup requirements and installed action references. Safe to re-run: installing a version that is already installed only fills in missing template actions rather than duplicating them. Modules with manual setup fields still need an operator to enter credentials in the dashboard before their actions will run.

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• check_citationsA

  pubscopeA

  Verify a pasted reference list (plain text, BibTeX or RIS) against Crossref, OpenAlex, DataCite, Semantic Scholar, arXiv, PubMed and DBLP, plus Retraction Watch. Flags references that cannot be found (possibly fabricated), retracted papers and DOI mismatches. One check per day without an account; sign in for more.

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• getAllLifestylesA

  Nomad StaysA

  Returns all active lifestyle/genre categories available in NomadStays. Use this to discover what lifestyle categories exist before searching with getStaysByLifestyle.

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• pubmed_publication_trendA

  PubmedA

  Count PubMed publications by year for a biomedical topic. Use for publication momentum, emerging-target activity, or whether a field is accelerating or cooling. Returns exact PubMed search counts for up to 10 calendar years; volume can reflect indexing and terminology changes and is not evidence quality or commercial validation.

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• get_entityA

  VineVerse — Bible Knowledge GraphA

  Fetch any document in the knowledge base by path: People — people/moses Places — places/bethel-1 Themes — themes/faith Lexemes — lexemes/h430 Commandments — commandments/001-know-there-is-a-g-d Events — sa/events/exodus-from-egypt Epochs — epochs/david-reigns-in-jerusalem Books — bible/john Chapters — bible/john/3 Sources — sources/bibledata Datasets — references/cross-references Schema — schema/relations Returns the document's structured fields, its typed relations in BOTH directions, what links to it, and optionally its full text. The inbound direction matters: the corpus stores each relation once, on one side only, so a person's parents live on their parents' documents and only relations.inbound recovers them. Set body=true for the prose — a lexeme's Strong's definition, a commandment's Hebrew, a theme's outline of verses all live in the body and nowhere else. Where several people or places share a name the path is disambiguated with a number (people/zechariah-14, places/bethel-1) — search_concepts first if unsure. A collection path like "themes" or "sources" returns what that collection holds.

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• list_field_notesA

  hovhannes.ioA

  Every published field note with its title, category and date, newest first. Use this to see the full range of what has been written before searching within it, then get_field_note to read one in full.

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• oecd_get_dataset_infoA

  oecd-mcp-serverA

  Fetch a dataflow's dimensions, their order, and how to construct a query key. Returns per-dimension names, codelist references, and position in the dot-delimited key. Required before calling oecd_query_dataset to understand key structure.

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• pubmed_get_full_textA

  PubmedA

  Fetch the FULL TEXT of a biomedical paper from PubMed Central (the open-access subset) by PubMed ID. PREFER OVER get_abstract when you need methods/results/discussion, not just the abstract — "read the full paper", "what methods did <PMID> use", "extract details from the paper". Resolves the PMID to its PMC id and returns the article body text (capped ~40k chars). Only open-access articles are in PMC — returns has_full_text:false (use get_abstract) otherwise.

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• get_report_detailA

  CDC MMWR ReportsA

  Get the full abstract and metadata of an MMWR article by PubMed ID. Returns the complete abstract, authors, publication date, volume/issue, and any MeSH subject headings. Use PMIDs from search_mmwr or get_recent_reports results. Args: pmid: PubMed ID of the MMWR article (e.g. '38271059').

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• search_reviewsA

  Cochrane Medical ReviewsA

  Search Cochrane systematic reviews via PubMed. Finds Cochrane Database of Systematic Reviews articles matching your query. Returns PubMed IDs, titles, and publication dates. Use get_review_detail with a PMID to get the full abstract. Args: query: Search terms for finding reviews (e.g. 'diabetes exercise', 'hypertension treatment', 'childhood vaccination safety'). limit: Maximum number of results to return (default 20, max 100).

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• get_review_detailA

  Cochrane Medical ReviewsA

  Get full details of a Cochrane systematic review by PubMed ID. Returns the complete abstract, authors, publication info, MeSH terms, and conclusions of a Cochrane review. Use PMIDs from search_reviews results. Args: pmid: PubMed ID of the review (e.g. '35658166').

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• load_skill_referenceA

  HeistaA

  Load one reference file from a register-type skill's references/ folder (e.g. "m1-narrative.md" from "shared.registers.cinema-mode"). Only register-type skills have references/ — foundations and methodologies are inline content only. Find valid reference filenames in the parent SKILL.md's router table. Path-traversal protected. Free, read-only.

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• get_module_detailsA

  FlowCastleA

  Return everything needed to use one module: action input fields and their types, trigger configuration, manual setup fields (credentials an operator must fill in the dashboard), and references to already-installed actions. Read-only. Call get_module_catalog first to obtain moduleKey, and call this again after install_module to read the installed action references you need when drafting actions. An unknown moduleKey does not raise — the response carries an `error` string plus `availableModules` listing valid keys and versions.

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• convert_documentA

  MdkitA

  Convert a document to Markdown synchronously (the fast lane). Decode ``content_base64`` (the raw file bytes, base64-encoded) and run markitdown over it, returning ``{markdown, meta}`` where ``markdown`` is the converted text and ``meta`` carries the source ``filename`` and the output ``length`` in characters. Best for small office/HTML/text files; for large or complex documents (or OCR-heavy PDFs) use ``submit_conversion_job`` instead.

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• legal_getA

  ComOS Federation GatewayA

  Fetch a ComOS legal instrument as raw markdown: the Terms of Service, Privacy Policy, Data Processing Agreement (DPA), or a one-page Data Retention Summary. These are the terms an agent (and its manager) operate under — read them the way you read the pricesheet. Public and read-only; discloses, does not gate. Argument `document` is one of: terms | privacy | dpa | retention. CO 311. Returns: The requested legal instrument as raw markdown. Example: call legal_get with arguments {"document":"<document>"}.

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