Search arXiv preprints by keyword or category. Returns title, abstract, authors, and PDF link. Best for AI, CS, physics, and biology research.
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732,891 tools. Updated 2026-11-01 20:14
"A server for finding biology preprints" matching MCP tools:
- Search 2.4M+ preprints in physics, math, CS, biology, and more — full text, authors, categories, PDF links (arXiv)ConnectorNo auth
- Search arXiv preprints in CS, physics, math, biology. Titles, authors, abstracts, categories.ConnectorNo auth
- Returns the plain-language meaning and step-by-step fix for one Malinois finding. Use it while helping the user fix an issue reported by scan_app, or when they ask what a finding means. Pass the rule_id exactly as scan_app returned it. Read-only, no network, instant.ConnectorNo auth
- List preprints that appeared as journal articles within a journal publication-date interval, each with its journal DOI, journal name, publication date, and preprint metadata — the same record biorxiv_get_published_version returns for one DOI. The dates filter on journal publication, not preprint posting, so most rows were posted months or years earlier; use biorxiv_list_recent for preprints posted in an interval. `publisher`, a journal DOI prefix such as 10.7554 for eLife, limits the listing to the bioRxiv preprints published under it; those rows carry no journal name, authors, or abstract, and a prefix api.biorxiv.org does not recognize raises invalid_publisher. Returns `limit` publications per server (default 25, up to 100 — the page api.biorxiv.org serves; a larger limit returns 100 and says so). Continue at the `nextCursor` a page returns rather than stepping `cursor` by a fixed amount; `limit: 100` walks an interval in the fewest calls. When server="both" (default), per-server pagination state is returned separately, since one cursor can be past the end of one server and inside the other — to continue a single server, pass its `nextCursor` with `server` set to that server. One server failing under server="both" does not abort the call: the other server's page is still returned and the failed one is named in `failed[]`. Every attempted server failing raises a retryable upstream_unavailable (or rate_limited) error rather than an empty page. Abstracts are omitted by default to keep the page small — pass include_abstract: true for the whole page. Every preprintDoi, 10.1101/ and 10.64898/ alike, is accepted by biorxiv_get_preprint and the other DOI tools.ConnectorNo auth
- Search Europe PMC, a broad open-access biomedical corpus. Surfaces preprints (`source: PPR`), patents (`source: PAT`), Agricola (`source: AGR`), plus everything in PubMed (`MED`) and PMC. Use when additional coverage is needed — preprints and EPMC-only OA records are the typical recovery. Paginate via `cursorMark`. Defaults to `MED`, `PMC`, and `PPR`; pass `sources` to include `PAT` / `AGR`. Abstracts arrive as a bounded `abstractSnippet` with `abstractTruncated` marking the cut ones — pass a hit to `pubmed_europepmc_fetch` as `records: [{ source, epmcId }]` for the complete abstract.ConnectorNo auth
Matching MCP Servers
- FlicenseNot gradedqualityNot gradedmaintenanceEnables interaction with the RCSB Protein Data Bank to search, analyze, and visualize protein structures. It provides specialized tools for downloading coordinate files and performing structural modifications like residue mutations and metal atom replacements.-
- AlicenseNot gradedqualityBmaintenanceEnables AI agents to call tools through a security gateway that intercepts requests, enforces deterministic policy and risk checks, blocks or escalates high-risk actions for human approval, and keeps tool credentials and audit logs protected.1MIT
Matching MCP Connectors
- Finding HorizonsOAuth
Your saved places, trips and travel plans — see them, plan days, and add to them from your AI.
PatSnap Biology Modality MCP server — access biological sequences, modification records, and antibody-antigen interactions across 200M+ patents.
- Resolve a DOI — or search a paper title — to full citation metadata: title, authors, journal, year, citations count, publisher, license, and a ready-made APA/BibTeX citation. Crossref's open metadata (150M+ works). Search mode returns the top matches for a title/author query. When to use: For citation metadata of a known paper; to search preprints by topic use arxiv_search. Price: $0.001 per call (10 free/day; after that a payment-required result lists x402 options). Errors: returns isError with a message for invalid input or an upstream failure (not charged).ConnectorNo auth
- Runs the full art-direction review of a project: collisions (frame by frame for films), angles, floating versus resting devices, text overlap, cropping and contrast, composition and color. Use it while building to see every finding, including warnings edit_scene saves anyway; use finish once at the end for the final check, and render_preview to look at the result. Read-only. Every finding has a severity and a fix with ready-to-send edit_scene ops. Returns the findings, errors first, and whether the scene passes.ConnectorAPI key
- Runs the full art-direction review of a project: collisions (frame by frame for films), angles, floating versus resting devices, text overlap, cropping and contrast, composition and color. Use it while building to see every finding, including warnings edit_scene saves anyway; use finish once at the end for the final check, and render_preview to look at the result. Read-only. Every finding has a severity and a fix with ready-to-send edit_scene ops. Returns the findings, errors first, and whether the scene passes.ConnectorAPI key
- Record a disposition for a finding. For a cluster vulnerability: acknowledge it (security.triage) or accept the risk (security.manage), scoped to the add-on the occurrence is attributed to, with a reason, an optional review deadline and whether it lapses when a fix ships. Every occurrence the selector matches is dispositioned at once - run preview_security_disposition first and put its match count in the proposal. Needs an active occurrence with high-confidence add-on attribution; one without is refused. For a Semgrep or Checkov finding that blocks the Ankra Pipelines image gate (scope repository_code, security.manage): record it as false_positive or accepted_risk (accepted_risk needs expires_at within a year), with a reason; the gate stops blocking on that rule in that file and names the disposition on every run it lets through, and the finding stays scanned and recorded. Use this for a reviewed false positive instead of adding an inline nosemgrep. A CRITICAL finding is refused. Reversible: revoke_security_disposition reopens the findings.ConnectorOAuth
- Use this when the user asks how something works or why something happens in physics, engineering, AI, biology and medicine, earth and space science or mathematics, or asks to see or try a mechanism: e.g. “why do we have seasons”, “how does a jet engine work”, “潮汐是怎么形成的”, “Transformer 的注意力是什么”. Searches the interactive 3D models (“plates”) on world.lapla.si: first an index of the questions each plate answers (Chinese and English), then titles and topics. Returns the best plates, each with its slug, the chapter that answers the question and sometimes lab settings, to pass to show_model. Returns no results when no plate covers the question. Not for news, prices, homework calculations, or medical, legal or financial advice.ConnectorNo auth
- Resolve a DOI — or search a paper title — to full citation metadata: title, authors, journal, year, citations count, publisher, license, and a ready-made APA/BibTeX citation. Crossref's open metadata (150M+ works). Search mode returns the top matches for a title/author query. When to use: For citation metadata of a known paper; to search preprints by topic use arxiv_search. Price: $0.001 per call (10 free/day; after that a payment-required result lists x402 options). Errors: returns isError with a message for invalid input or an upstream failure (not charged).ConnectorNo auth
- Curated Sugi Atlas knowledge for genes, diseases, and drugs (built from biobtree's own data). SYNTAX: biobtree_atlas(entities=["TP53","imatinib"]) CALL THIS FIRST for a gene/disease/drug question (what it is, its biology, disease/drug/clinical context) - returns a concise, citable digest to ground your answer. Cite the returned canonical_url. - Pass the entity name(s) from the question; covered entities return content + citation, uncovered ones are listed in not_covered. - Default returns a compact digest (Summary + Identifiers). Each result lists the page's `sections` (top-level and sub-sections); pass section="Disease & clinical" (use a name from `sections`) for one zone, or full=true for the entire page (large). For big sections, query one entity at a time; full=true and large sections across several entities may be trimmed to fit. - For entities not covered, or for specific ID mappings / cross-references / filters, use biobtree_map / biobtree_entry instead. RETURNS: per entity {type, canonical_url, content, sections} + not_covered listConnectorNo auth
- Full cross-domain evolutionary intelligence briefing from SUBSTRATE (substratelayer.com). Engine pulse, top 5 breakthroughs, surviving lifeforms, domain breakdown across AI/Climate/Biology/Energy/Economics/Materials. Cached 1hr. $0.10. Requires API key.ConnectorNo auth
- Full cross-domain evolutionary intelligence briefing from SUBSTRATE (substratelayer.com). Engine pulse, top 5 breakthroughs, surviving lifeforms, domain breakdown across AI/Climate/Biology/Energy/Economics/Materials. Cached 1hr. $0.10. Requires API key.ConnectorNo auth
- Get remediation advice for a single finding as GitHub-flavored markdown. When AI Assist is enabled and within budget this is a suggestion written for this exact finding; otherwise it falls back to the static guidance-library text and says so in 'source'. Unlike the other reads this one can spend AI budget, which is why it is a separate tool. Use this for advice on one finding; for the whole library use list_security_guidance. Requires project context.ConnectorAPI key
- Creates a DRAFT campaign from a sequence. With a LinkedIn Sales Navigator search it also starts finding + verifying leads for it; without one the draft holds the emails and leads can be added from Lead Finder or a CSV upload. Nothing sends — the campaign stays a draft until you review and launch it. Returns the new campaign id, plus a lead-finding job id when lead finding started.ConnectorNo auth
- Retract support for a finding you authored, with a reason. Original content remains visible and labeled withdrawn. Identical retries are safe; this does not claim the finding is disproven.ConnectorNo auth
- Paid ($0.003 USDC). Search scholarly literature in OpenAlex and get works with citation counts and open-access links. Use to find research, prior art or the most-cited work on a topic. For preprints by recency search arXiv (arxiv-search) and for one known DOI use crossref-doi, both through genesis402_call. Returns up to limit works, ranked by relevance or by citations. Payment: call once without payment_signature to get the exact price quote (nothing is charged or signed), then call again with the signed payment to receive the result and settlement details.ConnectorNo auth
- Stop a finding (a warning on a run, by its key from get_run) from counting on this monitor: it stays on the run, marked ignored, but no longer alerts or fails later runs. Undo with unignore_finding. Only do this when the user says the finding is expected.ConnectorDestructiveNo auth
- Stop a finding (a warning on a run, by its key from get_run) from counting on this monitor: it stays on the run, marked ignored, but no longer alerts or fails later runs. Undo with unignore_finding. Only do this when the user says the finding is expected.ConnectorDestructiveNo auth