"A database for genomic and biological data (Ensembl)" matching MCP tools:

• mygene.genes.batchA

  apibaseB

  Retrieve annotation data for up to 1000 genes in a single request by providing a comma-separated list of NCBI Entrez Gene IDs or Ensembl gene IDs. Returns the same fields as mygene.genes.info for each gene: symbol, name, gene type, taxon, summary, Ensembl IDs, UniProt accession, genomic coordinates, and pathway memberships. Ideal for enriching gene lists from RNA-seq experiments, GWAS results, or drug target panels. Mix of NCBI Entrez and Ensembl IDs is supported in the same request.

  ConnectorNo auth

• get_proteinA

  Protein AtlasA

  Get a trimmed Human Protein Atlas profile for one protein by Ensembl gene id (e.g. "ENSG00000146648"): gene, description, protein class, biological process, molecular function, RNA tissue specificity/distribution, subcellular location, and disease involvement. Use search_genes to find the Ensembl id. Keyless.

  ConnectorNo auth

• mygene.genes.infoA

  apibaseB

  Retrieve comprehensive annotation data for a single gene by its NCBI Entrez Gene ID or Ensembl gene ID. Returns the full gene record including: official symbol and name, gene type (protein-coding, ncRNA, pseudo, etc.), species taxon, gene summary, Ensembl transcript and protein IDs, UniProt Swiss-Prot accession, gene aliases, genomic coordinates (chromosome, start, end, strand), KEGG and Reactome pathway memberships, and Gene Ontology (GO) annotations across biological process, cellular component, and molecular function. Use mygene.genes.search or mygene.genes.symbol to discover Entrez Gene IDs first.

  ConnectorNo auth

• set_site_typeA

  BorealHostB

  Change what a site's docroot IS, without deleting anything. Types: wordpress WordPress, PHP and a database (the default) php PHP and a database, no WordPress php-nodb PHP, no database static-site HTML/CSS/JS only, no PHP and no database ⚠ NON-DESTRUCTIVE. Existing files stay on disk and existing databases are not dropped. They remain the customer's data and keep counting against their plan's quota — this changes how the site is SERVED, not what it holds. Converting back later finds everything where it was. ⚠ Moving to a type without PHP does not merely stop executing .php — it stops serving them. The vhost returns 404 for php/phtml, because falling through to the static handler would return the file's SOURCE, and a docroot converted from WordPress still contains wp-config.php with the database password in it. Shared hosting only. On a VPS the whole container is the customer's and they reconfigure it with the tools inside it. Requires: API key with write scope. Args: slug: Site identifier site_type: One of the four values above Returns: {"from": "wordpress", "to": "static-site", "database_created": false, "placeholder_seeded": false, "pool_removed": true} `placeholder_seeded` is true only when the docroot was EMPTY — an existing site's content is never overwritten. Errors: VALIDATION_ERROR: Unknown type, or the site is not on shared hosting NOT_FOUND: Unknown slug or not reachable by this account

  ConnectorNo auth

• ensembl_get_sequenceA

  ensembl-mcp-serverA

  Fetch the DNA, cDNA, CDS, or protein sequence for a gene, transcript, protein, or genomic region. Returns a window of the sequence — the first 10,000 characters by default — with its stable ID, molecule type, and full length. When more follows the window, truncated is true and nextOffset is the offset to request next; walking nextOffset reconstructs the whole sequence, and max_length 0 returns everything from offset to the end. The type parameter selects which sequence is fetched: genomic (default, includes introns), cdna (spliced transcript), cds (coding sequence only), protein. For region mode, set id to a region — either species:chr:start-end (e.g. homo_sapiens:13:32315086-32400268) or a bare chr:start-end with species set (e.g. id 13:32315086-32400268, species homo_sapiens), spanning at most 10,000,000 bases; regions return genomic DNA only. Protein sequences require a transcript or protein stable ID (ENST…/ENSP…), not a gene ID — use ensembl_lookup_gene with expand_transcripts=true to get the canonical transcript ID first.

  ConnectorNo auth

• biobtree_mapA

  BioBTreeA

  Map identifiers between databases. SYNTAX: biobtree_map(terms="ID", chain=">>source>>target") - Chain MUST start with ">>" - Source MUST match input ID type ID TYPE → SOURCE: - ENSG* → >>ensembl - P*/Q*/O* → >>uniprot - CHEMBL* → >>chembl_molecule - GO:* → >>go - MONDO:* → >>mondo - HP:* → >>hpo - HGNC:* or gene symbols → >>hgnc SOME DRUG EXPLORATION PATHS: - >>chembl_molecule>>chembl_target>>uniprot (drug targets) - >>pubchem>>pubchem_activity>>uniprot (bioactivity) - >>gtopdb_ligand>>gtopdb_interaction>>gtopdb>>uniprot (curated pharmacology with affinity data) - >>ensembl>>reactome>>chebi (pathway chemicals - when no direct targets) - Discover more via entry xrefs + EDGES WARNING - GO terms with high xref_count (>100): - Don't map GO → proteins → drugs (too many results) - Instead: search drug class for condition → verify targets this GO term DISEASE GENE PATTERNS: - >>mondo>>gencc>>hgnc (curated) - >>mondo>>clinvar>>hgnc (variant-based) - >>hgnc>>clingen_gene_validity (ClinGen evidence tier), >>hgnc>>clingen_dosage (haploinsufficiency), >>hgnc>>clingen_variant>>clinvar (ACMG, then dbsnp) CANCER / CELL LINE: - >>hgnc>>intogen (cancer driver gene?), >>hgnc>>civic (clinical variant interpretations) - >>uniprot>>cellosaurus (cell lines for a protein/gene) - >>hgnc>>depmap (CRISPR essentiality / target tractability), >>hgnc>>entrez>>depmap_dependency>>cellosaurus (which lines depend on the gene) GENE FUNCTION / LITERATURE: - >>entrez>>generif (cited one-line functional claims; >>generif>>pubmed for citations) DISEASE → DRUG PATTERNS: - >>mesh>>chembl_molecule (MeSH disease/condition → drugs with indications) - >>mondo>>clinical_trials>>chembl_molecule (disease → trial drugs) DISCOVERY APPROACH: - Use biobtree_entry to see xrefs (what's connected) - Use EDGES above to see where each dataset leads - Build chains based on what connections exist for YOUR entity RETURNS: mapped identifiers with dataset and name EDGES (what connects to what): ensembl: uniprot, go, transcript, exon, ortholog, paralog, hgnc, entrez, refseq, bgee, gwas, gencc, antibody, scxa, civic, intogen, hpa, hpa_antibody, pharmgkb_var_annotation, chembl_mechanism, ncrna_disease, ncrna_interaction, ncrna_drug, alliance_disease, gnomad_constraint, drugcentral, panelapp_gene hgnc: ensembl, uniprot, entrez, gencc, pharmgkb_gene, msigdb, clinvar, mim, refseq, alphafold, collectri, gwas, hpo, cellphonedb, civic, intogen, cellosaurus, clingen_gene_validity, clingen_dosage, clingen_variant, depmap, hpa, pharmgkb_var_annotation, chembl_mechanism, ncrna_disease, ncrna_interaction, ncrna_drug, alliance_disease, drugcentral, panelapp_gene, gnomad_constraint, mavedb entrez: ensembl, uniprot, refseq, go, biogrid, pubchem_activity, ctd_gene_interaction, dbsnp, civic, intogen, clingen_dosage, generif, depmap, depmap_dependency, hpa, pharmgkb_var_annotation, orthologentrez, relatedentrez, neighborentrez, mgi, rgd, zfin, wormbase, xenbase, sgd, flybase, gnomad_constraint, drugcentral orthologentrez: entrez # cross-species gene orthologs (NCBI gene_orthologs). >>entrez>>orthologentrez gives ortholog genes (filter species via taxonomy); reliable from model-organism genes (human-gene side currently incomplete) relatedentrez: entrez # related genes (bidirectional): NCBI gene_group (functional gene/pseudogene/readthrough/region) + HGNC gene-family co-members neighborentrez: entrez # genomic neighbors (left/right/overlapping); edge carries distance + side, neighbor strand/position in attrs; filter to genes via [type!="biological-region"] gnomad_constraint: ensembl, entrez, hgnc, transcript # gene LoF constraint (pLI/LOEUF/oe_lof); reach via >>ensembl>>gnomad_constraint drugcentral: chembl_molecule, pubchem, uniprot, ensembl, hgnc, entrez # approved drugs -> targets/MOA + FDA/EMA/PMDA approval; reach via name/INN/InChIKey or compound (chembl_molecule/pubchem >> drugcentral) refseq: ensembl, entrez, taxonomy, ccds, uniprot, mirdb mirdb: refseq transcript: ensembl, exon, ufeature, alphamissense, civic_variant, gnomad_constraint, mavedb uniprot: ensembl, alphafold, interpro, pfam, pdb, ufeature, intact, string, string_interaction, biogrid, biogrid_interaction, chembl_target, go, reactome, rhea, swisslipids, bindingdb, antibody, pubchem_activity, cellphonedb, jaspar, signor, diamond_similarity, esm2_similarity, alphamissense, cellosaurus, hpa, chembl_mechanism, ncrna_interaction, drugcentral, mavedb alphafold: uniprot interpro: uniprot, go, interproparent, interprochild chembl_molecule: mesh, chembl_activity, chembl_target, pubchem, chebi, clinical_trials, chembl_moleculeparent, chembl_moleculechild, chembl_mechanism, ncrna_drug, faers, drugcentral # parent=anhydrous/parent form, child=salt forms chembl_activity: chembl_molecule, chembl_assay, bao chembl_assay: chembl_activity, chembl_target, chembl_document, bao chembl_target: chembl_assay, uniprot, chembl_molecule, chembl_mechanism chembl_mechanism: chembl_molecule, chembl_target, uniprot, hgnc, ensembl # curated drug mechanism-of-action (incl. RNA therapeutics): drug >> chembl_mechanism, target/gene >> chembl_mechanism pubchem: chembl_molecule, chebi, hmdb, pubchem_activity, pubmed, patent_compound, bindingdb, ctd, pharmgkb, ncrna_drug, faers, drugcentral faers: chembl_molecule, pubchem, faers_reaction # openFDA FAERS drug->adverse-event; faers (per-drug master) -> faers_reaction children (PRR), reach via drug name or compound. NOTE co-occurrence not causation faers_reaction: faers # one per (drug,reaction): report_count, prr, serious_count, outcome; most-reported first pubchem_activity: pubchem, ensembl, uniprot chebi: pubchem, rhea, intact swisslipids: uniprot, go, chebi, uberon, cl lipidmaps: chebi, pubchem dbsnp: entrez, clinvar, pharmgkb_variant, alphamissense, spliceai, pharmgkb_var_annotation clinvar: hgnc, mondo, hpo, dbsnp, orphanet, civic_variant, cellosaurus, clingen_variant alphamissense: uniprot, transcript mavedb: uniprot, hgnc, ensembl, transcript # deep-mutational-scanning functional variant scores (ACMG PS3/BS3); reach via gene/protein >> mavedb; per-variant score + hgvs_pro + license # VARIANT-EFFECT SCORES — look up by the variant's OWN key with biobtree_entry(dataset=..), NOT via >>chains: # conservation key "chr:pos" (GRCh38) per-position phyloP / GERP / phastCons (also covers non-missense/splice positions) # gnomad_variant key "chr:pos:ref:alt" (GRCh38) gnomAD v4.1 genomes allele freq (af, grpmax, per-ancestry); also xrefs dbsnp # revel key "chr:pos:ref:alt" (GRCh38) REVEL ensemble missense pathogenicity (0-1, higher = pathogenic) # saprot key "uniprot:protein_variant" SaProt protein-LM variant effect (LLR <=0, lower = more damaging), e.g. P01116:G12D gwas: gwas_study, efo, dbsnp, hgnc, mondo gwas_study: gwas, efo, mondo mondo: gencc, clinvar, efo, mesh, hpo, clinical_trials, antibody, cellxgene, cellxgene_celltype, orphanet, mondoparent, mondochild, gwas, gwas_study, civic, intogen, cellosaurus, doid, mim, ncit, umls, medgen, gard, sctid, icd9, icd10cm, icd10who, icd11, nando, meddra, nord, uberon, ncrna_disease, panelapp_gene # disease cross-refs + disease_has_location anatomy, from the Mondo OBO doid: mondo, alliance_disease, doidparent, doidchild # Disease Ontology (now a full ontology w/ hierarchy); reach MONDO + its disease graph via the mondo<->doid bridge alliance_disease: hgnc, mgi, rgd, zfin, sgd, wormbase, flybase, xenbase, doid, pubmed # cross-species + human gene->disease (Alliance of Genome Resources); gene >> alliance_disease >> doid, or doid >> alliance_disease >> mgi/rgd/... for model-organism genes alliance_phenotype: mgi, rgd, wormbase, xenbase, mp, wbphenotype, xpo, pubmed # model-organism gene -> OBSERVED knockout/mutant phenotypes (distinct from the upheno ontology-translation path). Reach from the model-organism gene directly: mgi/rgd/wormbase/xenbase >> alliance_phenotype >> mp gencc: mondo, hpo, hgnc, ensembl clingen_gene_validity: hgnc, entrez, ensembl, mondo # ClinGen gene-disease validity tier (Definitive..Refuted) + MOI clingen_dosage: entrez, hgnc, ensembl, mondo, mim, pubmed # ClinGen haploinsufficiency/triplosensitivity per gene clingen_variant: clinvar, hgnc, entrez, ensembl, mondo, pubmed # ClinGen VCEP ACMG variant pathogenicity (clinvar bridges to dbsnp) panelapp: panelapp_gene # Genomics England clinical gene panels (per-panel master); panel >> panelapp_gene >> hgnc for the panel's genes panelapp_gene: panelapp, hgnc, ensembl, mim, mondo # one per (panel,gene), green/amber confidence + mode-of-inheritance; a gene's panels via >>hgnc (panelapp_gene) ; the panel's disease via mondo/mim clinical_trials: mondo, chembl_molecule pharmgkb: hgnc, dbsnp, mesh, pharmgkb_gene, pharmgkb_variant, pharmgkb_clinical, pharmgkb_guideline, pharmgkb_pathway pharmgkb_variant: pharmgkb_clinical, hgnc, mesh, dbsnp pharmgkb_gene: hgnc, entrez, ensembl, pharmgkb pharmgkb_clinical: dbsnp, hgnc, mesh, pharmgkb_variant, pharmgkb # pharmgkb = reverse drug→clinical edge (drug >> pharmgkb >> pharmgkb_clinical) pharmgkb_guideline: hgnc, pharmgkb pharmgkb_pathway: hgnc, pharmgkb pharmgkb_var_annotation: hgnc, entrez, ensembl, dbsnp, pubmed # per-publication variant-annotation evidence (finding sentence, PMID, significance, study stats) beneath pharmgkb_clinical; reach via gene or rsID ctd: mesh, ctd_gene_interaction, ctd_disease_association, pubchem ctd_gene_interaction: ctd, entrez, taxonomy, pubmed ctd_disease_association: ctd, mesh, mim, pubmed intact: uniprot, chebi, rnacentral string: uniprot, string_interaction string_interaction: string, uniprot biogrid: entrez, uniprot, refseq, taxonomy bgee: ensembl, uberon, cl, taxonomy, bgee_evidence bgee_evidence: bgee, uberon, cl cellxgene: cl, uberon, mondo, efo, taxonomy cellxgene_celltype: cl, uberon, mondo scxa: cl, uberon, taxonomy, ensembl, scxa_gene_experiment scxa_expression: ensembl, scxa, scxa_gene_experiment scxa_gene_experiment: ensembl, scxa, scxa_expression, cl hpa: ensembl, uniprot, hgnc, entrez, go, uberon, hpa_expression, hpa_pathology, hpa_antibody # Human Protein Atlas gene card: subcellular location (→go), specificity calls, top tissues hpa_expression: hpa, uberon, cellosaurus # per (gene,tissue/cell-line) RNA nTPM + IHC staining; reach genes-in-a-tissue via uberon >> hpa_expression hpa_pathology: hpa # per (gene,cancer) prognostic survival association hpa_antibody: hpa, ensembl # HPA validation antibody (reliability, antigen) rnacentral: uniprot, ensembl, intact, hgnc, refseq, ena, go # go = Rfam-projected GO annotations; rfam_id/rfam_description are attrs on the entry ncrna_disease: hgnc, ensembl, mondo, efo, pubmed # curated ncRNA->disease (LncRNADisease + HMDD); reach from the ncRNA gene ncrna_interaction: hgnc, ensembl, uniprot, pubmed # experimentally-supported ncRNA->protein interactions (NPInter) ncrna_drug: hgnc, ensembl, chembl_molecule, pubchem, pubmed # ncRNA drug-resistance / drug-target (ncRNADrug) reactome: ensembl, uniprot, chebi, go, reactomeparent, reactomechild rhea: chebi, uniprot, go go: ensembl, uniprot, reactome, msigdb, swisslipids, bgee, interpro, goparent, gochild, hpa, rnacentral hpo: clinvar, gencc, mondo, msigdb, orphanet, mim, hmdb, hgnc, hpoparent, hpochild, upheno efo: gwas, mondo, cellxgene, efoparent, efochild, ncrna_disease upheno: hpo, mp, zp, xpo, wbphenotype, fypo, uphenoparent, uphenochild # cross-species phenotype hub. A GENE's model-organism phenotypes are reached THROUGH hpo (genes are NOT linked directly to mp/upheno): >>hgnc>>hpo>>upheno>>mp (mouse), >>hgnc>>hpo>>upheno>>zp (zebrafish), ...>>xpo/wbphenotype/fypo. So gene->human HP phenotypes -> their cross-species equivalents. mp: upheno, mpparent, mpchild, alliance_phenotype # Mammalian Phenotype Ontology (mouse/rat). Reach from a gene via >>hgnc>>hpo>>upheno>>mp (NOT >>hgnc>>mp); observed model phenotypes via alliance_phenotype. zp: upheno, zpparent, zpchild # Zebrafish Phenotype Ontology. Reach from a gene via >>hgnc>>hpo>>upheno>>zp. xpo: upheno, xpoparent, xpochild, alliance_phenotype # Xenopus Phenotype Ontology wbphenotype: upheno, wbphenotypeparent, wbphenotypechild, alliance_phenotype # C. elegans Phenotype Ontology fypo: upheno, fypoparent, fypochild # Fission Yeast Phenotype Ontology uberon: bgee, cellxgene, cellxgene_celltype, swisslipids, uberonparent, uberonchild, hpa, hpa_expression cl: bgee, cellxgene, cellxgene_celltype, scxa, scxa_gene_experiment, clparent, clchild taxonomy: ensembl, uniprot, bgee, biogrid, ctd_gene_interaction, taxparent, taxchild mesh: pharmgkb, ctd, ctd_disease_association, pubchem, mondo, chembl_molecule, meshparent, meshchild eco: ecoparent, ecochild antibody: ensembl, uniprot, mondo, pdb msigdb: hgnc, entrez, go, hpo orphanet: hpo, uniprot, mondo, hgnc, clinvar, mim, mesh mim: clinvar, hpo, mondo, uniprot, ctd_disease_association, panelapp_gene hmdb: pubchem, hpo, chebi, uniprot collectri: hgnc # transcription factor → target gene interactions esm2_similarity: uniprot # protein structural similarity diamond_similarity: uniprot # protein sequence similarity cellphonedb: uniprot, ensembl, hgnc, pubmed # ligand-receptor pairs for cell-cell communication spliceai: hgnc pdb: uniprot, go, interpro, pfam, taxonomy, pubmed fantom5_promoter: ensembl, hgnc, entrez, uniprot, uberon, cl fantom5_enhancer: ensembl, uberon, cl fantom5_gene: ensembl, hgnc, entrez jaspar: uniprot, pubmed, taxonomy encode_ccre: taxonomy bao: chembl_activity, chembl_assay, baoparent, baochild brenda: uniprot, pubmed, brenda_kinetics, brenda_inhibitor brenda_kinetics: brenda brenda_inhibitor: brenda gtopdb: uniprot, hgnc, gtopdb_ligand, gtopdb_interaction # drug targets (GPCRs, ion channels, enzymes) gtopdb_ligand: pubchem, chebi, chembl_molecule, gtopdb_interaction # ligands/drugs with binding data gtopdb_interaction: gtopdb, gtopdb_ligand, pubmed # target-ligand binding with affinity values civic: entrez, ensembl, civic_variant, civic_evidence, civic_assertion # clinical interpretation of cancer variants civic_variant: civic, clinvar, civic_evidence, civic_assertion, transcript civic_evidence: civic_variant, civic, mondo, chembl_molecule, pubmed, clinical_trials civic_assertion: civic_variant, civic, mondo, chembl_molecule intogen: hgnc, entrez, ensembl, mondo, pubmed # cancer driver genes cellosaurus: taxonomy, uniprot, hgnc, mondo, orphanet, clinvar, dbsnp, uberon, cl, chebi, doi, patent, pubmed, depmap_dependency, hpa_expression # cell lines (CVCL) generif: entrez, pubmed # NCBI cited per-gene functional claims (RAG grounding) depmap: entrez, hgnc, ensembl # CRISPR gene essentiality aggregate (cancer dependency / target tractability) depmap_dependency: entrez, cellosaurus # per cell-line gene dependency (effect < -0.5) FILTER SYNTAX: >>dataset[field operator value] OPERATORS: == equals >>dataset[field=="value"] != not equals >>dataset[field!="value"] > greater than >>dataset[field>value] < less than >>dataset[field<value] >= greater or equal >>dataset[field>=value] <= less or equal >>dataset[field<=value] contains string match >>dataset[field.contains("value")] LOGICAL OPERATORS: && AND >>dataset[field1>5 && field2<10] || OR >>dataset[field=="A" || field=="B"] ! NOT >>dataset[!field] or >>dataset[!(field=="value")] TYPE RULES: - FLOAT: use decimal point (70.0 not 70) - INT: no decimal (2 not 2.0) - STRING: quote values ("Pathogenic", "PHASE3") - BOOL: true/false (no quotes) EXAMPLES: >>chembl_molecule[highestDevelopmentPhase==4] # approved drugs >>chembl_molecule[highestDevelopmentPhase>=3] # Phase 3+ >>clinical_trials[phase=="PHASE3"] >>go[type=="biological_process"] >>clinvar[germline_classification=="Pathogenic"] >>reactome[name.contains("signaling")] >>gtopdb[type=="gpcr"] # GPCR targets >>gtopdb[type=="ion_channel"] # ion channel targets >>gtopdb_ligand[approved==true] # approved drugs only >>gtopdb_interaction[endogenous==true] # endogenous ligand interactions

  ConnectorNo auth

• execute_queryA

  BorealHostB

  Run ONE bounded read against a site's database. One statement, beginning with SELECT, SHOW, DESCRIBE or EXPLAIN, with no second statement and no data-modifying clause anywhere in it. The container proves the statement is a read before running it and caps the result: 200 rows by default, 1000 maximum, 2 MB of cell data. `truncated` in the response says whether a cap was reached. ⚠ THIS TOOL CANNOT CHANGE ANYTHING, AND RETRYING WITH DIFFERENT WORDING WILL NOT MAKE IT. Anything that is not a single bounded read is refused with READ_ONLY and nothing runs. To change data or schema, use the tool for the job: optimize_database, database_search_replace, manage_db_user, list_databases, list_tables — and for creating, altering, dropping, importing or exporting tables, the database manager in the control panel, which has no tool here. Requires: API key with write scope (unchanged — the scope is the customer's published permission for this operation, not a claim about what it does). Args: slug: Site identifier database: Database name query: One read statement Returns: {"columns": ["id", "user_email"], "rows": [[1, "a@example.com"], ...], "row_count": 1, "truncated": false, "execution_time_ms": 12.0} Errors: READ_ONLY: Not a single bounded read. The error text carries the explanation and names the operation to use instead.

  ConnectorNo auth

• pingA

  Nordic Financial MCPA

  Connectivity check that confirms the Nordic MCP server process is responding. Use this at the start of a session to verify the server is reachable before making other calls. Do not use as a proxy for database health — the server can respond while the Qdrant vector database is temporarily unavailable. To confirm data availability, call search_filings directly. Returns: A greeting string: "Hello {name}! Nordic MCP server is running."

  ConnectorNo auth

• delete_deploymentA

  mcpA

  Deletes a deployment and its underlying app VM. Pass the numeric id from list_deployments. IMPORTANT: if the deployment used database:'managed', the managed Postgres VM is NOT deleted (data safety) — this tool returns its id so you can delete_database it when you're done with the data. Cannot be undone.

  Connector

  Destructive

  No auth

• query_databaseA

  flootA

  Run a READ-ONLY SQL query against the project's Postgres database (SELECT, EXPLAIN, etc.) — the Floot-managed database, or an external Postgres the user connected to the project. Writes are rejected — use execute_sql for those. Returns JSON: `{rows, rowCount, command, truncated?}` (or `{results: [...]}` for multi-statement queries). Pass `database` only if the project has more than one.

  ConnectorOAuth

• query_databaseA

  HostingFor.AIA

  PHP + MySQL plans: runs one read-only SQL statement (SELECT, SHOW, DESCRIBE, EXPLAIN or WITH … SELECT) against the site's database and returns the rows. Runs in a read-only transaction; use execute_sql to change data. Use ? placeholders with params for values.

  ConnectorOAuth

• export_datasetA

  Misata Studio: verified synthetic dataA

  Export a generated dataset as a file. Returns a `download_url` the person can open (or you can fetch, e.g. with curl) for as long as the dataset is held, about 2 hours. Give the person the link rather than pasting file contents into the chat. Args: dataset_id: from a prior generate_dataset call. format: data: csv, parquet, jsonl, json, avro, xlsx, feather, orc, sqlite, duckdb, sql. code and docs: dbt, notebook, dictionary, dbml, mermaid, prisma, sqlalchemy, typescript, jsonschema, expectations, django, openapi, mockapi, demo. `sql` is schema.sql (DDL with keys) + data.sql (COPY/INSERT) — the way to seed a real database: run the returned SQL through your own database connection, since this server never holds a database credential itself. dialect: for `sql` only: postgres, mysql, sqlite, mssql, oracle, bigquery, snowflake. inline: also return the file itself as `base64` (only for files under a few MB). Use it when you must write the file yourself and cannot fetch a URL. Returns: filename, content_type, bytes, download_url, expires_at (unix seconds), and `base64` when `inline` and small enough.

  ConnectorNo auth

• publish_schemaA

  Entity EnricherA

  Publish a database-linked schema's working copy as the contract used by enrichment and replicas. A newly linked schema sends nothing until first publication; unlinked drafts cannot be published. Requires editor; no LLM call. Call validate_only=true to inspect the diff, blockers, warnings and per-database migration_sql. Transform migrations require user-approved confirm_transforms=true; cross-schema conflicts remain blockers. key_language may be required if classification revealed a multilingual key. Returns publication state; queued migrations apply asynchronously on replicas. See enricher://docs/database-sync for the review and delivery workflow.

  Connector

  Destructive

  OAuth

• enable_dataA

  GenHTTP LambdaA

  Switch on a kind of data the lambda needs and does not have: 'database' (a SQLite database for its records - off until switched on, which makes it, empty), 'secrets' (off until switched on) or 'workspace' (on unless the owner switched it off). Do it when what you build needs it - records need the database, an API key for a service it calls needs secrets. Takes effect at once, without a deploy; switching the database on starts the lambda again on its next request, so its migrations run. There is no tool to switch one off: that deletes what it held, and is the owner's to do in the editor.

  Connector

  Destructive

  No auth

• resize_databaseA

  DockholdA

  Change how much memory an app's managed database gets. Call this when the database is slow or out of memory. db_ram_mb must be one of the sizes get_resource_usage reports under db_ram.steps_mb and fit your database-RAM pool. WARNING: the database restarts briefly to apply the new size, so the app loses its database connection for a few seconds. Only works if the app has a managed database.

  ConnectorNo auth

• ensembl_predict_variantA

  ensembl-mcp-serverA

  Predict the functional consequences of a sequence variant using the Ensembl Variant Effect Predictor (VEP). Accepts three input formats: HGVS notation (transcript-relative, e.g. ENST00000380152.8:c.2T>A, or genomic, e.g. 13:g.32316462T>A); region+allele (chr:start:end:strand/allele, e.g. 1:65568:65568:1/T); and a dbSNP rsID (e.g. rs334). Returns the most severe consequence term, affected transcripts and genes, impact level (HIGH/MODERATE/LOW/MODIFIER), and any colocated known variants with clinical significance. HGVS input: provide the full notation including transcript version for best results. Region+allele input: Ensembl normalizes chromosome names and canonical vertebrate output omits the chr prefix (a chr-prefixed name is also accepted). By default the response caps transcript consequences (max_transcript_consequences) and per-variant PubMed IDs (max_pubmed_ids_per_variant) to keep large VEP results compact — well-studied variants like rs334 otherwise carry 60+ consequences and 100+ citations. Truthful totals are always reported; set a cap to 0 (or include_all_colocated_pubmed=true) to retrieve the full set.

  ConnectorNo auth

• getRedditPostWithCommentsByIdA

  Social Media Search API — Twitter, Instagram, Reddit, TikTok (XPOZ)A

  Get Reddit post by ID with its comments. Returns both the post data and comments in a single response. FAST (default, omit responseType or responseType="fast"): Returns post and up to 300 comments directly (use limit param to reduce, e.g. limit=5). Auto API fallback for fresh data. Results include guidance for full mode. PAGING (responseType="paging"): Async paginated results (100 comments/page), returns operationId for polling via checkOperationStatus. Supports pageNumber/tableName for subsequent pages. RESPONSE STRUCTURE: Returns { results: { post: {...}, comments: [...] }, count, guidance }. PAGING MODE DETAILS: FIRST CALL: Omit pageNumber and tableName. Creates cached table for comments, returns page 1 with post data and pagination metadata. SUBSEQUENT PAGES: Use tableName from first response with pageNumber (2, 3, etc.) to fetch additional comment pages. Post data is NOT returned on subsequent pages. FIELD SELECTION: Use postFields for post data optimization, commentFields for comment data optimization. First searches database for both post and comments, then external API if data is stale or missing. This is a safe, read-only tool for analyzing searchable information.

  ConnectorOAuth

• get_analyticsA

  DreamlitA

  Read-only. Use to query Dreamlit analytics for overview metrics, notification rows, recipient engagement, or workflow run rows with filters, sorting, and cursor pagination. Returns bounded structured analytics data, effective query metadata, pagination details when rows are included, and relevant app URLs. Do not use for CSV exports, bulk dumps, workflow edits, publishing, or low-level database access.

  ConnectorNo auth

• create_databaseA

  tmpstateA

  Create a temporary JSON database (24h TTL, no signup, no keys). Returns the db URL — the only credential — plus admin URL, limits and expiry. Create once per project/task, persist the db URL immediately (local ~/.tmpstate/credentials, project README, and your memory), and reuse it instead of creating again. For retries or parallel workers, pass a stable idempotency_key so duplicate calls return the same database.

  ConnectorNo auth

• create_databaseA

  Orivox AI Website BuilderA

  Give this project a database, so the published site can store what visitors submit -- contact-form messages, bookings, enquiries, signups. Call this when the site needs to KEEP what visitors send rather than just email it onward, or when the user asks where their form submissions go. One database per project, created and named by Orivox; there is nothing to configure and no filename to choose. Safe to call more than once: if the project already has one, nothing is changed and ``created`` comes back False. Check ``created`` before telling the user anything was set up. ``tables`` lists what the database currently holds -- an empty list means it exists but nothing has been stored yet, which is the normal state for a site that has not been published or has had no submissions. SCOPE: this CREATES the database. To read what visitors submitted, use the query_database tool; forms store rows through the site's own data-collection contract, not through this call.

  ConnectorOAuth

• droptrack_get_runtime_contextA

  DropTrackA

  Attest the connected DropTrack MCP stage, base URL, non-secret database fingerprint, configured database-target match, Lambda identity, region, and authorization role. Call this before any write. Require databaseTargetMatchesExpected=true, compare stage, base URL, and fingerprint to the canonical environment table, then pass the exact stage and database fingerprint to guarded write tools. Never infer environment from company data alone.

  ConnectorOAuth