"Tools or methods to operate and modify files" matching MCP servers:

Provides MCP tool adapters for Bioconductor methods like limma, DESeq2, and fgsea, enabling statistical analysis of omics data through containerized R execution. It serves as a bridge between MCP clients and bioinformatics tools for reproducible research workflows.

Recommends study designs for a research question, states the identifying assumptions to verify, and returns runnable R, Python, or Julia code with a formatted citation for every source, drawn from methodological textbooks, an R package, and research articles on causal inference, econometrics, statistics, and machine learning.

MCP server that intelligently modifies CVs based on job descriptions using keyword extraction and strategic enhancement.

Enables read-only listing and reading of files in an Azure Files SMB share, enforcing each user's NTFS permissions per request.

A comprehensive MCP server providing tools for AI agents to interact with code, including reading symbols, importing modules, replacing text, and sending OS notifications.

Enables agents to quickly find and edit code in a codebase with surgical precision. Find symbols, edit them everywhere with tools for reading code blocks, searching/replacing text, and making precise line-based modifications.

Converts any Python Click or Typer CLI into an MCP server automatically — zero-code transformation that introspects CLI commands and exposes them as MCP tools.

一个基于FastMCP协议的文件向量化服务，支持自动目录监控、多格式文件处理和高效向量搜索，帮助构建个人或团队知识库。

Enables deterministic calculations for AI API and subscription costs, meeting time zones, recurring schedules, and cron next-run previews, returning normalized inputs, units, assumptions, dated sources, and links to results.

Converts AI Skills (following Claude Skills format) into MCP server resources, enabling LLM applications to discover, access, and utilize self-contained skill directories through the Model Context Protocol. Provides tools to list available skills, retrieve skill details and content, and read supporting files with security protections.

Enables AI assistants to convert CSS-animated SVGs into videos (MP4/WebM/MKV/MOV) and animated images (aPNG/GIF) with frame-accurate rendering and transparency support.

Enables AI agents to inspect any public domain’s web technology stack, email deliverability and DNS health (MX, SPF, DKIM, DMARC, MTA-STS, TLS-RPT, BIMI), and HTTPS security posture with typed JSON scores and remediation-ready findings, plus history, bulk checks, monitoring alerts, and reverse technology lookups.

A Model Context Protocol server that converts Markdown documents to plain text with flexible options and dual protocol support.

Enables AI models to perform file operations, user management, automations, and more within Files.com's secure file transfer platform via the Model Context Protocol.

Word document reading and writing MCP implemented in Node.js

Enables AI assistants to query PostgreSQL, MySQL, SQL Server, Oracle, and MongoDB databases through MCP with read-only, audited access.

Provides deterministic tools for transforming, formatting, and inspecting structured data for AI agents.

Enables MCP clients to connect to a privacy-first, self-hostable workout planning and training log, allowing coaching agents to preview and apply program changes while accessing training data through OAuth-protected endpoints.

Enables LLMs to query documents using semantic search, supporting PDFs, Word, Excel, and more. Organizes documents by topics from folder structure and provides advanced search features like phrase matching and date filtering.

Enables AI agents to search, filter, and monitor curated AI model API free credits and low-cost token promotions through eight tools, four resources, and three prompts — including finding deals expiring soon, checking eligibility and blocked conditions, and producing daily briefs.

Enables existing Express routers to be exposed as MCP tools, dispatching tool calls through the Express middleware stack in-process without a network hop.

Turns any OData V2 or V4 service, SAP Gateway included, into MCP tools that AI clients such as Claude, ChatGPT, Copilot, and Cursor can call without code by reading $metadata. It lets models discover entity sets and fields, then query services through built-in read-only tools.

Auto-generates MCP tools from your OpenAPI spec, allowing natural language interaction with any API via configurable headers and serverless deployment.

Turns local project directories into persistent MCP workspaces, allowing AI agents to read files, modify code, run commands, manage Git, and save session progress across conversations.

Provides a secure, constrained filesystem workspace for LLM agents to manage files, notes, and code artifacts via stdio or remote HTTP. It features granular access controls, including extension whitelisting, storage quotas, and immutable paths for safe automated file operations.

Enables AI assistants to call any SOAP/WSDL web service as MCP tools, automatically converting each WSDL operation into a callable tool with authentication and security controls.

A Rust + Tauri 2 desktop application that turns local project folders into persistent MCP workspaces, enabling AI agents to read files, modify code, run commands and tests, check Git status, and maintain cross-conversation development context through historical checkpoints, with built-in WSS/FRP/Cloudflare tunnels and OAuth for connecting to ChatGPT.

Empower any MCP-compatible AI Agent(MCP Client) with engineering-grade capabilities to understand, modify, run, and deliver real-world code repositories.

A minimal MCP server that auto-generates tools from your OpenAPI spec, optimized for Vercel.

A standalone proxy that transforms any OpenAPI or Swagger-described REST API into an MCP server by mapping API operations to executable MCP tools. It enables AI clients to interact with existing web services through automated HTTP requests based on their official documentation.