"Tools or methods to operate and modify files" matching MCP servers:

Provides MCP tool adapters for Bioconductor methods like limma, DESeq2, and fgsea, enabling statistical analysis of omics data through containerized R execution. It serves as a bridge between MCP clients and bioinformatics tools for reproducible research workflows.

MCP server that intelligently modifies CVs based on job descriptions using keyword extraction and strategic enhancement.

Enables read-only listing and reading of files in an Azure Files SMB share, enforcing each user's NTFS permissions per request.

A comprehensive MCP server providing tools for AI agents to interact with code, including reading symbols, importing modules, replacing text, and sending OS notifications.

Enables agents to quickly find and edit code in a codebase with surgical precision. Find symbols, edit them everywhere with tools for reading code blocks, searching/replacing text, and making precise line-based modifications.

Converts any Python Click or Typer CLI into an MCP server automatically — zero-code transformation that introspects CLI commands and exposes them as MCP tools.

一个基于FastMCP协议的文件向量化服务，支持自动目录监控、多格式文件处理和高效向量搜索，帮助构建个人或团队知识库。

Converts AI Skills (following Claude Skills format) into MCP server resources, enabling LLM applications to discover, access, and utilize self-contained skill directories through the Model Context Protocol. Provides tools to list available skills, retrieve skill details and content, and read supporting files with security protections.

A Model Context Protocol server that converts Markdown documents to plain text with flexible options and dual protocol support.

Enables AI models to perform file operations, user management, automations, and more within Files.com's secure file transfer platform via the Model Context Protocol.

Word document reading and writing MCP implemented in Node.js

Provides deterministic tools for transforming, formatting, and inspecting structured data for AI agents.

Enables MCP clients to connect to a privacy-first, self-hostable workout planning and training log, allowing coaching agents to preview and apply program changes while accessing training data through OAuth-protected endpoints.

Enables LLMs to query documents using semantic search, supporting PDFs, Word, Excel, and more. Organizes documents by topics from folder structure and provides advanced search features like phrase matching and date filtering.

Auto-generates MCP tools from your OpenAPI spec, allowing natural language interaction with any API via configurable headers and serverless deployment.

A minimal MCP server that auto-generates tools from your OpenAPI spec, optimized for Vercel.

A standalone proxy that transforms any OpenAPI or Swagger-described REST API into an MCP server by mapping API operations to executable MCP tools. It enables AI clients to interact with existing web services through automated HTTP requests based on their official documentation.

Turns GitHub repository history into a cited maintainer skill for coding agents, providing tools to collect evidence, query the knowledge graph, and inspect bundles.

Automatically converts Swagger/OpenAPI specifications into dynamic MCP tools, enabling interaction with any REST API through natural language by loading specs from local files or URLs.

Provides tools for AI-powered graph analysis, including relationship extraction, adjacency matrix creation, and network centrality calculations. It enables users to perform complex structural analysis and generate interactive D3.js visualizations from structured data.