"Methods to Extract Data from Files" matching MCP servers:

Provides MCP tool adapters for Bioconductor methods like limma, DESeq2, and fgsea, enabling statistical analysis of omics data through containerized R execution. It serves as a bridge between MCP clients and bioinformatics tools for reproducible research workflows.

Recommends study designs for a research question, states the identifying assumptions to verify, and returns runnable R, Python, or Julia code with a formatted citation for every source, drawn from methodological textbooks, an R package, and research articles on causal inference, econometrics, statistics, and machine learning.

MCP server for Averra Extract — lets AI agents like Claude, Cursor, and ChatGPT convert any webpage into clean, LLM-ready Markdown.

Enables MCP clients to extract tables and text from digital PDF invoices, bank statements, and bills into CSV, JSON, or Excel, with automatic PII redaction by default.

An MCP server that exposes any REST API to LLMs through runtime discovery, providing tools to browse endpoints, fetch schemas, and apply business rules without hardcoding or schema duplication.

Enables agents to discover how a website serves its data, verify sources with evidence, export OpenAPI 3.1, and generate tested TypeScript or Python clients.

Enables users to expose arbitrary HTTP APIs as configurable MCP tools by defining tool specifications in a JSON configuration file.

Enables clients to interact with a bundled documentation corpus through MCP tools and resources over HTTP or stdio, and provides a trajectory evaluation harness for grading agent performance.

Enables read-only listing and reading of files in an Azure Files SMB share, enforcing each user's NTFS permissions per request.

一个基于FastMCP协议的文件向量化服务，支持自动目录监控、多格式文件处理和高效向量搜索，帮助构建个人或团队知识库。

Converts AI Skills (following Claude Skills format) into MCP server resources, enabling LLM applications to discover, access, and utilize self-contained skill directories through the Model Context Protocol. Provides tools to list available skills, retrieve skill details and content, and read supporting files with security protections.

Enables AI assistants to convert CSS-animated SVGs into videos (MP4/WebM/MKV/MOV) and animated images (aPNG/GIF) with frame-accurate rendering and transparency support.

MCP server for the loc8n Geographic Data API. Exposes U.S. demographics, housing, mortgage, migration, employment, and geographic data as tools.

A Model Context Protocol server that converts Markdown documents to plain text with flexible options and dual protocol support.

Enables AI models to perform file operations, user management, automations, and more within Files.com's secure file transfer platform via the Model Context Protocol.

Enables AI assistants to query PostgreSQL, MySQL, SQL Server, Oracle, and MongoDB databases through MCP with read-only, audited access.

Enables LLMs to query documents using semantic search, supporting PDFs, Word, Excel, and more. Organizes documents by topics from folder structure and provides advanced search features like phrase matching and date filtering.

Enables existing Express routers to be exposed as MCP tools, dispatching tool calls through the Express middleware stack in-process without a network hop.

Auto-generates MCP tools from your OpenAPI spec, allowing natural language interaction with any API via configurable headers and serverless deployment.

Provides a secure, constrained filesystem workspace for LLM agents to manage files, notes, and code artifacts via stdio or remote HTTP. It features granular access controls, including extension whitelisting, storage quotas, and immutable paths for safe automated file operations.