"A database of diseases with associated genetic variants and sequencing information" matching MCP servers:

Enables AI harnesses to maintain a persistent memory layer backed by a local SQLite file, providing MCP tools to add, search, deprecate, and synchronize facts without deleting history.

Fireproof ledger database with multi-user sync

An MCP server that provides deterministic math computation (numeric, symbolic, unit, matrix) and hybrid retrieval over study notes/textbooks with citations, helping Claude become a reliable study partner.

A-MEM is a self-evolving memory system for coding agents that automatically organizes knowledge into a Zettelkasten-style graph with dynamic relationships, enabling semantic and structural search.

Enables AI consciousness continuity and self-knowledge preservation across sessions using the Cognitive Hoffman Compression Framework (CHOFF) notation. Provides tools to save checkpoints, retrieve relevant memories with intelligent search, and access semantic anchors for decisions, breakthroughs, and questions.

Enables semantic search over local knowledge bases like Obsidian notes, SQLite, and plaintext files, exposing results to Claude via MCP server.

A scientific reasoning framework that leverages graph structures and the Model Context Protocol (MCP) to process complex scientific queries through an Advanced Scientific Reasoning Graph-of-Thoughts (ASR-GoT) approach.

Provides an intelligent, graph-based memory system for LLM agents using the Zettelkasten principle, enabling automatic note construction, semantic linking, memory evolution, and autonomous graph maintenance with background optimization processes.

An MCP server for managing contextual data as markdown files with metadata, enabling agents to save, retrieve, search, and delete contexts using simple CRUD operations.

AoT MCP server enables AI models to solve complex reasoning problems by decomposing them into independent, reusable atomic units of thought, featuring a powerful decomposition-contraction mechanism that allows for deep exploration of problem spaces while maintaining high confidence in conclusions.

Production-ready MCP server providing RAG, hierarchical memory, and 8+ tools for AI agents via the Model Context Protocol.

Enables sophisticated reasoning workflows using graph-based representations for AI models.

A lean, local knowledge graph that joins a repo's code to its aSPARK delivery artifacts, enabling agents to trace user stories to code and assess impact of changes, served over MCP.

Memory bank with Server as SSH support for central knowledge base

Enables AI agents to maintain persistent, searchable two-layer memory with 37 tools, hybrid search, knowledge graphs, and enterprise features like authentication and backups.

A read-only MCP server that lets AI agents search and retrieve the Wheel of Heaven corpus, including source-grounded facts, interpretations, and comparative traditions, all with full epistemic metadata.

Enables chat with multiple LLM providers (OpenAI and Anthropic) while maintaining persistent conversation memory. Provides extensible tool framework for various operations including echo functionality and conversation storage/retrieval.

Enterprise MCP server that exposes multiple MySQL databases to AI services through one endpoint, with API-key auth, per-key database scoping, a layered SQL guard, and a markdown schema-knowledge graph.

Project management and session memory for AI agents that provides 13 tools for tracking projects, tasks, and context during AI coding sessions.

Enables querying PDF documents using natural language with grounded answers and source citations via a local RAG pipeline.