"A server for running bioinformatics tools" matching MCP servers:

MCP server that allows Claude AI to interact directly with MySQL databases, enabling query execution and table information retrieval through natural language.

This MCP server provides secure access to databases for AI agents, enforcing authentication, authorization, human approval, logging, and notifications to prevent dangerous actions.

Read-only MySQL MCP server that lets AI agents list tables, describe schemas, and run SELECT/SHOW/EXPLAIN queries with a row cap, bound to a single database for safety.

A portfolio MCP server demonstrating four tools (web search, database query, file reading, directory listing) with read-only SQL, filesystem sandbox, and both stdio and HTTP transports.

A safety-gated Python MCP server for Metabase that lets MCP clients and agents inspect Metabase, run governed queries, and create or maintain dashboards, cards/questions, collections, snippets, permissions, and other Metabase assets through the Metabase REST API.

MCP data connector for Jazz v2 alpha servers, providing schema discovery and query/read tools with optional mutation capabilities for application data.

Enables AI agents to format SQL, explain queries in plain English, analyze schemas, build queries from natural language, and generate migrations, all without requiring a database connection.

Enables exploring Microsoft Fabric / Power BI workspaces and semantic models, and executing ad-hoc DAX queries.

Exposes SQL Server and Snowflake schema metadata to AI coding agents, enabling schema search, join path discovery, and stored procedure metadata retrieval without live queries.

A SQL Server CLI and MCP server for Claude Code that supports standard SQL Server authentication for database interaction and management. It enables users to perform schema exploration, execute queries, and manage data records with built-in SQL injection prevention.

Enables AI assistants to search YouTube videos using the official YouTube Data API v3, extract full video transcripts in multiple languages, and store/retrieve video summaries using a local database.

Provides a scalable knowledge graph implementation for Model Context Protocol using Elasticsearch, enabling AI models to store and query information with advanced search capabilities, memory-like behavior, and multi-zone architecture.

mcp-clickhouse-long-running

Read-only MCP tools for TROCCO API, enabling workflow and BigQuery datamart audit information retrieval.

Provides comprehensive SQLite database operations for LLMs with security features, transaction support, and separation of read-only and destructive operations.

Database schema management MCP server for Claude Code, enabling natural language management from business requirements to complete databases.

A governed MCP server enabling LLM agents to query BigQuery, inspect GCS, trigger Airflow DAGs, and run data-quality checks with built-in security guardrails like allow-lists, cost ceilings, and audit trails.

Enables database schema querying and execution plan analysis for Spring Boot projects. Supports multiple databases including MySQL, PostgreSQL, MSSQL, and SQLite.

An MCP server that equips AI agents with real-world tools including file operations, read-only MySQL queries, web summarization, safe calculations, and system info. It uses stdio transport and enforces safety guardrails like SELECT-only database access and AST-based math evaluation.

MCP server that connects AI assistants to Redash, enabling listing of assets, read-only query execution, dashboard inspection, and alert management through the Redash API.