"A server for running bioinformatics tools" matching MCP servers:

Enables Large Language Models to access and manipulate Autodesk Revit models through a pyRevit-based bridge and the Model Context Protocol.

Provides agents with real Linux VMs to run commands, manage files, expose ports, and track costs, all through an ephemeral sandbox service.

An MCP server that provides a persistent sandbox for AI coding agents to explore codebases server-side, returning only compact summaries to reduce context consumption.

A Model Context Protocol server for time manipulation tasks, enabling AI models to get the current date/time and calculate duration between timestamps.

A comprehensive Model Context Protocol server providing access to 70+ IT tools for developers and system administrators, including encoding/decoding, text manipulation, hashing, and network utilities.

A dynamic MCP server that automatically discovers Python files in a directory and exposes them as tools to any MCP-compatible AI client, allowing users to easily create and deploy custom AI tools.

A Model Context Protocol server providing AI assistants with comprehensive project, task, and subtask management capabilities with project-specific storage.

Enables coding agents to perform file, search, patch, git, process, test, package, network, and system operations through 60 typed MCP tools with structured inputs/outputs, structured errors, and a full event journal, replacing terminal use with a typed machine API.

Provides AI agents with tools to retrieve live system statistics (CPU, memory) and safely evaluate basic arithmetic expressions.

A meta-MCP server that orchestrates tools from multiple MCP servers, enabling complex Python workflows with loops and conditionals.

Enables AI agents to execute tools securely with Docker isolation, tier-based permissions, and feature flags, providing a centralized tool registry and MCP server.

A Model Context Protocol (MCP) server that provides TypeScript development tools for automated refactoring and code analysis.

Extends VS Code Copilot with MCP tools for persistent semantic memory, code indexing and RAG search, sandboxed Python/shell execution, web fetch/search, dynamic tool management via a web UI, and structured multi-step reasoning.

A collection of production-ready MCP tools for common tasks such as web search, code execution, file operations, and database queries, enabling AI agents to perform these actions through a unified interface.

Enables AI assistants to perform controlled Linux system administration tasks like reading logs, managing services, cron jobs, WordPress, and executing sandboxed Python code, with strict security constraints.

Guides problem-solving by breaking down complex problems into steps and recommending appropriate MCP tools for each stage, with confidence scores and rationales for tool suggestions.

MCP server wrapping DeepSeek's agent harness tools into minimal/standard modes, enabling persistent shell, file editing, search, job management, and more via natural language.

Enables dynamic creation and execution of custom tools/functions in multiple programming languages at runtime, exposing them to MCP clients like Claude.

Gives any MCP-compatible AI chat or agent a safe, model-neutral coding runtime with file read/search, structured multi-file patches, command execution, interactive sessions, and git operations, all confined to a single workspace and gated by permission modes.

A FastMCP server implementation that provides a standardized interface for accessing AI models hosted on Replicate's API, currently supporting image generation with customizable parameters.