"Understanding and Working with a Huge Codebase" matching MCP servers:

Enables AI agents to query free biomedical and pharmaceutical APIs for clinical trials, drug data, molecular structures, adverse events, and research literature.

Enables LLM agents to query de-identified FHIR-shaped hospital data through audited, read-only tools for patients, encounters, conditions, observations, medications, and interaction checks, while any medication write stays a draft that a clinician must confirm out-of-band.

Provides oncology data (research, news, FDA approvals, clinical trials) and IBM MAMMAL biomedical predictions (PPI, DTI, ClinTox) as MCP tools. Allows AI agents to query cancer datasets and run predictions through a remote MCP server.

Enables genomic sequence analysis through the Evo 2 model, supporting DNA sequence scoring, embedding, generation, and variant effect prediction with multiple model checkpoints (7B, 40B, 1B parameters).

Enables variant annotation and effect prediction using the Ensembl VEP API, with support for batch and single queries.

An open source biomedical research agent that provides LLMs with 28 tools for drug discovery, protein analysis, literature search, medical imaging, omics, and sandbox execution, all running locally via Ollama and MedGemma.

Explains why two scientific papers disagree. A contradiction explorer for bench scientists that compares two studies' designs and grounds every claim in a verbatim quote from the source text.

Enables querying Brazilian PCDT clinical protocols from Conitec and generating concise, context-specific treatment summaries using a local LLM, with verified literal citations and links to official PDFs.

Enables querying and monitoring Brazilian Federal Council of Medicine resolutions on AI, telemedicine, and electronic medical records, with a local searchable copy and official document links.

MyChart MCP Server

TransBench is a translational research agent that takes free-text clinical observations, decomposes them into biological axes, generates falsifiable hypotheses grounded in PubMed evidence, and designs reproducible computational experiments with concrete datasets for Claude Science.

MCP server that reads glucose data from a FreeStyle sensor via the LibreLinkUp API, providing current glucose and history with explicit coverage and gaps.

Enables querying Anvisa's open data for drug registration status and recent medical devices, with heuristic AI-use classification using a locally hosted LLM.

Enables natural language querying of brain volumes (NIfTI) with a fixed set of tools, returning visualizations and reproducible nilearn code.

An MCP server for longevity and metabolic medicine that provides a medication catalog, dosing protocols, contraindication screening, drug interaction checks, lab recommendations, and patient intake pathways across 35 compounds.

Provides direct SQL access to a locally hosted Reactome database, enabling schema discovery, guarded read-only queries, and ergonomic helpers over the full relational schema.

Enables validation of clinical notes in SOAP format, checking required fields and semantic coherence using a local LLM, all processed locally with no data leaving the machine.

A Model Context Protocol (MCP) server for interacting with Gen3 data commons, with GraphQL query validation to reduce hallucinations.

Enables agents to interact with a clinic booking API, including listing specialties, doctors, and a patient's appointments, and booking or cancelling appointments when the active profile permits, while preserving the caller's authority and screening tool descriptions for safety.

Exposes a clinic's knowledge base and structured records to Claude Desktop as callable tools, with read tools grounded with citations and write tools gated behind approval.