"Tools and applications for reading PDF files" matching MCP servers:

MCP server to batch download open-access PDFs from PubMed Central (PMC), supporting PMCID/PMID lookup, parallel downloads, and download reports.

Enables clinical question answering via OpenEvidence with citation verification, including tools to ask questions, retrieve results, and follow up, plus an integrated skill to check citations against primary sources.

Provides in-process RDKit cheminformatics operations — descriptors, fingerprints, similarity and substructure search, reaction enumeration, standardization, and 3D conformer generation — for AI agents.

Provides FHIR resource validation, synthetic test fixture generation, and HIPAA-safe logging review as MCP tools for AI agents.

A Claude Code extension that embeds a senior athenahealth integration engineer in your development workflow, proactively catching data loss bugs and guiding safe DataView queries and API integrations.

Exposes four CMS public datasets as callable tools in Claude conversations, enabling natural-language real-world evidence analytics without SQL expertise.

Enables deep probabilistic analysis of single-cell omics data using scvi-tools through natural language. Supports SCVI for scRNA-seq analysis, SCANVI for cell type annotation, TOTALVI for multi-modal RNA/protein data, and PEAKVI for scATAC-seq analysis.

A specialized MCP server for Metal-Organic Framework research that provides tools for database searching, structural optimization, and energy calculations via ASE. It enables scientific workflows by allowing users to interact with MOF data and perform chemical simulations through a standard SSE interface.

Enables searching and fetching articles from PubMed, a database of biomedical literature.

Enables interaction with the CEDAR (Center for Expanded Data Annotation and Retrieval) metadata repository to fetch templates and retrieve template instances. Supports querying structured metadata and biomedical data annotations through the CEDAR platform.

Enables querying FDA drug label information including adverse reactions, warnings, and indications via natural language.

Provides programmatic access to ClinicalTrials.gov API with 18 specialized tools for searching, analyzing, and retrieving detailed information about 400,000+ clinical trials worldwide, including filtering by condition, location, phase, sponsor, eligibility criteria, and outcomes.

Provides access to an AI medical chatbot API for healthcare assistance, enabling natural language interactions such as neurosurgery queries.

Enables searching cryo-EM density maps in EMDB and raw datasets in EMPIAR, with filtering by resolution, keyword, and cross-referencing between the two databases.

An MCP server for clinical workflows with tools for patient lookup, appointment booking, prescriptions, drug interactions, symptom triage, lab results, insurance eligibility, and telehealth, enforcing role-based access control and audit logging.

This server enables interacting with the National Digital Health Mission's Health Information User (HIU) API, allowing agents to access and manage health information through the Multi-Agent Conversation Protocol.

Enables LLMs to discover, understand, and generate Teal R Shiny applications for clinical trial data analysis.

MyChart MCP Server

MCP server for Dexcom CGM glucose data, enabling AI agents to access and analyze continuous glucose monitor readings for health intelligence applications.

An MCP server that exposes a DICOMweb-compliant DICOM archive to AI assistants. It lets any MCP-capable client search studies, series and instances, inspect metadata, read Structured and Encapsulated PDF Reports, and render image frames — all through natural language.