"Retrieving Markdown Files from a Database" matching MCP servers:

MCP server for the STRING protein–protein interaction database, hosted by STRING at mcp.string-db.org. Adapted for LLM grounding: responses are size-limited and include metadata and notes on interpretation and next steps. Tools cover identifier resolution, interaction networks and evidence, functional and PPI enrichment, and sequence similarity search.

Enables LLM agents to query de-identified FHIR-shaped hospital data through audited, read-only tools for patients, encounters, conditions, observations, medications, and interaction checks, while any medication write stays a draft that a clinician must confirm out-of-band.

Public read-only MCP server providing structured access to Atlarium habitat data and advisory functions for aquariums, terrariums, and related systems.

Enables genomic sequence analysis through the Evo 2 model, supporting DNA sequence scoring, embedding, generation, and variant effect prediction with multiple model checkpoints (7B, 40B, 1B parameters).

Enables variant annotation and effect prediction using the Ensembl VEP API, with support for batch and single queries.

An open source biomedical research agent that provides LLMs with 28 tools for drug discovery, protein analysis, literature search, medical imaging, omics, and sandbox execution, all running locally via Ollama and MedGemma.

Enables querying Brazilian PCDT clinical protocols from Conitec and generating concise, context-specific treatment summaries using a local LLM, with verified literal citations and links to official PDFs.

Enables semantic retrieval and assembly of ICD-10-CM value sets from natural language descriptions for clinical cohort definitions.

Explains why two scientific papers disagree. A contradiction explorer for bench scientists that compares two studies' designs and grounds every claim in a verbatim quote from the source text.

MCP server enabling AI agents to search and retrieve evidence reviews from evipedia.ai on health and longevity interventions, and to suggest new interventions for review.

MCP server that reads glucose data from a FreeStyle sensor via the LibreLinkUp API, providing current glucose and history with explicit coverage and gaps.

Monitors PubMed and medRxiv for configurable research topics, summarizes papers using a local LLM, and stores deduplicated results in a local database.

Enables Claude Desktop to query and analyze diabetes data from Omnipod 5 and Glooko through natural language, providing clinical audit and triage insights such as time in range, trends, and bolus analysis.

Works out a health plan from your own record: which screening is due and evidence-based suggestions with citations. Reads and writes one health-roadmap.json file on your machine; nothing is sent to a server.

Local MCP server to access your personal health data from E-Nabız (Turkish Ministry of Health) via an LLM. Read-only, secure, and respects privacy.

Enables AI agents to retrieve cited pharmacogenomic and gene-variant information, including drug–gene guidance from CPIC/DPWG and rsID lookups, so responses can quote curated sources instead of relying on memory. A local package also lets users read raw DNA files on their own computer without sending the file data to the remote service.

Enables coding agents to interact with the Reactome pathway database, including search, lookup, hierarchy traversal, SBML/SBGN export, and gene-set enrichment analysis.

Provides direct SQL access to a locally hosted Reactome database, enabling schema discovery, guarded read-only queries, and ergonomic helpers over the full relational schema.

Enables natural language querying of EFSA's OpenFoodTox database containing 8,006 chemical substances with toxicity data, safety assessments, risk limits, and genotoxicity studies for food additives, pesticides, and contaminants.

Renders interactive 2D molecular structure diagrams from SMILES notation and computes molecular properties like molecular weight, LogP, and TPSA, directly in the chat.

Search 200M+ patents and scientific literature in natural language using PatSnap's global R&D intelligence database.

MCP server that turns a medRxiv DOI into clean markdown full text and provides free, relevance-ranked preprint search via Europe PMC.

Enables searching biomedical images (X-rays, CT/MRI, clinical photos, etc.) from the Open-i database using natural language queries, returning image results as Markdown links.

Enables agents to interact with a clinic booking API, including listing specialties, doctors, and a patient's appointments, and booking or cancelling appointments when the active profile permits, while preserving the caller's authority and screening tool descriptions for safety.

An MCP server that provides mouse genetics data from Mouse Genome Informatics (MGI), enabling LLM agents to query markers, mutations, alleles, phenotypes, and disease models.

Enables LLM clients and agents to produce realistic synthetic medical referral letter PDFs — a German Überweisungsbrief/Arztbrief or the same letter in another language — either from structured JSON with deterministic, seeded rendering or from a free-text description written by a configured LLM. Each call returns the finished PDF as an embedded resource plus the completed letter content and its seed as structured data.

Enables searching the public Dutch AGB-register for healthcare providers, practices and locations by AGB-code, name, zorgsoort, place or postcode, and retrieving full registrations with their kwalificaties, erkenningen and relations. Runs live against the register with no API key or account, and also looks up zorgsoort and kwalificatie codes offline.

Typed, validated FHIR tools for healthcare AI agents — build, read, validate, and code FHIR resources from a patient bundle, with terminology lookup and machine-readable validation reports built for fix-and-retry.

Connects to FHIR R4 servers and enables natural language search, read, and optional write of FHIR data from MCP clients like Claude Desktop/Code.

Enables checking whether a medicine has a reported shortage in Portugal (Infarmed monitoring, export-suspension and prior-notification lists) and finding pharmacies in a municipality that are on duty today or open now, with addresses, phone numbers and distances. Also surfaces the relevant help lines and next steps, read-only from public sources and without pharmacy stock data.