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20 Best MySQL MCP Servers: compared and ranked, November 2026Ranked from 638 matching servers on stars, growth, downloads and maintenance. Updated .

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    Enables language models to search biomedical literature, fetch sequences, and follow links across Entrez databases through eleven read-only tools wrapping the nine NCBI Entrez E-utilities. It handles URL building, pacing, redirects, response caps, and API-key redaction so queries can be answered without a browser or scraping.
    11
    MIT
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    A structure-aware MCP server for querying the SPOKE biomedical knowledge graph, enabling entity resolution, schema introspection, path finding, and safe Cypher queries for biomedical knowledge inference.
    5
    Apache 2.0
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    Verified ICD-10-CM code lookup & validation for AI agents — official descriptions, not guesses.
    3
    127 npm
    1
    Apache 2.0
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    Enables coding agents to interact with the Reactome pathway database, including search, lookup, hierarchy traversal, SBML/SBGN export, and gene-set enrichment analysis.
    17
    MIT
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    Provides direct SQL access to a locally hosted Reactome database, enabling schema discovery, guarded read-only queries, and ergonomic helpers over the full relational schema.
    9
    MIT
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    Enables natural language querying of EFSA's OpenFoodTox database containing 8,006 chemical substances with toxicity data, safety assessments, risk limits, and genotoxicity studies for food additives, pesticides, and contaminants.
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    5
    MIT
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    Enables searching biomedical images (X-rays, CT/MRI, clinical photos, etc.) from the Open-i database using natural language queries, returning image results as Markdown links.
    2
    MIT
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    Enables LLMs to search LOINC terms with free-text, relevance-ranked, and faceted queries via the LOINC Search API, mirroring the loinc.org/search experience.
    5
    MIT
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    Enables AI assistants to interact with the Open Targets Platform API to search and retrieve comprehensive data about target-disease associations, drugs, genes, and drug discovery information through GraphQL queries.
    5
    37
    Apache 2.0
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    Enables AI agents and applications to search, retrieve, and analyze chemical compounds, substances, and bioassays from PubChem's vast chemical information database through comprehensive tools for chemical research and discovery.
    10
    829 npm
    12
    Apache 2.0
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    MCP server for the STRING protein–protein interaction database, hosted by STRING at mcp.string-db.org. Adapted for LLM grounding: responses are size-limited and include metadata and notes on interpretation and next steps. Tools cover identifier resolution, interaction networks and evidence, functional and PPI enrichment, and sequence similarity search.
    17
    8
    MIT
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    MCP server that provides tools for querying the Human Phenotype Ontology (HPO) including term lookup, hierarchy exploration, cross-ontology mappings, and gene-phenotype-disease associations, all grounded in a local SQLite database for fast offline lookups.
    17
    1
    MIT
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    Enables Claude Desktop to securely access FreeStyle LibreLink continuous glucose monitoring data, providing real-time readings, historical analysis, and health insights through natural language queries.
    8
    15
    MIT
  • F
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    Enables medical RAG queries over locally indexed PDFs via AnythingLLM, with multilingual reranking and verifiable book/page citations, for use with Antigravity or any MCP client.
    5
    1
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    Enables AI agents to make read-only queries for curated NP/APRN state requirement data across 56 US jurisdictions — practice authority, licensure, continuing education rules, renewal, prescribing and board contacts — using your own API key.
    5
    MIT
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    An MCP server for interventional pain medicine that provides Medicare documentation checklists, CPT/ICD-10 coding, ASRA anticoagulation guidance, prior-authorization letters, denial appeals, and research evidence for 85+ procedures.
    9
    72 npm
    MIT
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    MCP server for pediatric CKD lab data, providing lab panel queries, critical value alerts, trend analysis, and write operations with role-based permissions.
    5
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    Connects DHIS2 health information systems to AI assistants via the Model Context Protocol, enabling natural language queries for analytics, metadata, and tracker data.
    13
    MIT
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    Enables querying the openFDA drug adverse event database for pharmacovigilance work-ups: case searches, counts and demographic/outcome breakdowns, disproportionality measures (ROR/PRR with Mantel-Haenszel adjustment), and empirical Bayes (MGPS/EBGM) signal scores, including bulk screening and stratification by sex, age, or year alongside confounder-adjusted analyses.
    15
    1
    MIT
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    Bridges your Nightscout CGM data with AI assistants via the Model Context Protocol, enabling natural language queries about glucose readings, treatments, statistics, and pattern analysis.
    21
    GPL 3.0
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    Enables users to store and query their own medical data—labs, medications, diagnoses, wearables, and food logs—in a local Postgres database and interact with it through any MCP client, with deterministic safety checks.
    36
    3
    AGPL 3.0