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  • F
    license
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    Builds and manages a cardiology-focused knowledge graph in Neo4j by extracting medical entities and relationships from documents using LLMs. It enables users to ingest PDFs, refine extracted data, and perform natural language queries to gain clinical insights.
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    Enables AI assistants to read COVID-19 lateral flow test results from photographs by calling a deployed computer-vision pipeline, returning verdicts like positive or negative with confidence.
    MIT
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    maintenance
    Enables AI agents to manage virtual clinic data including patients, visits, diagnoses, treatments, lab/radiology orders, and search medical literature and internal knowledge base.
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    maintenance
    Enables AI agents to query the Reactome biological pathway knowledge-base for pathways, participants, and orthologous events using natural language.
    49 npm
    MIT
  • A
    license
    A
    quality
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    maintenance
    Explains why two scientific papers disagree. A contradiction explorer for bench scientists that compares two studies' designs and grounds every claim in a verbatim quote from the source text.
    2
    3
    37 npm
    2
    MIT
  • A
    license
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    quality
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    An MCP server that grounds protein research in the UniProt SPARQL endpoint, providing tools for querying proteins, sequences, variants, diseases, and more via intent-named tools and raw SPARQL.
    15
    MIT
  • A
    license
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    quality
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    maintenance
    Enables language models to search biomedical literature, fetch sequences, and follow links across Entrez databases through eleven read-only tools wrapping the nine NCBI Entrez E-utilities. It handles URL building, pacing, redirects, response caps, and API-key redaction so queries can be answered without a browser or scraping.
    11
    MIT
  • A
    license
    A
    quality
    B
    maintenance
    A structure-aware MCP server for querying the SPOKE biomedical knowledge graph, enabling entity resolution, schema introspection, path finding, and safe Cypher queries for biomedical knowledge inference.
    5
    Apache 2.0
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    license
    A
    quality
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    maintenance
    Grounds gene-nomenclature work in the HUGO Gene Nomenclature Committee (HGNC) dataset, enabling resolution of gene symbols and IDs to canonical HGNC identifiers, plus cross-references and batch operations.
    9
    MIT
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    license
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    quality
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    maintenance
    An MCP server implementing the ROBINS-I V2 framework for risk-of-bias assessment in non-randomized studies, with deterministic algorithms and full provenance. It enables users to parse study documents, specify target trial results, answer signalling questions with evidence-bound quotes, and compute or override domain judgements.
    9
    Apache 2.0
  • F
    license
    A
    quality
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    maintenance
    TransBench is a translational research agent that takes free-text clinical observations, decomposes them into biological axes, generates falsifiable hypotheses grounded in PubMed evidence, and designs reproducible computational experiments with concrete datasets for Claude Science.
    3
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