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    Enables AI agents to control Fiji/ImageJ for microscopy image analysis through natural language commands, supporting operations like image opening, filtering, particle analysis, and automated workflows.
    19
    2
    BSD 3-Clause
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    license
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    quality
    D
    maintenance
    A high-performance MCP server that gives LLMs access to 25 biomedical tools federated across 50+ upstream APIs for genes, variants, drugs, diseases, literature, clinical trials, and structural biology.
    25
    67
    2
    MIT
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    MCP server for controlling Opentrons robots (OT-2/Flex) via HTTP API v2 and Python Protocol API, enabling protocol validation, upload and execution, status monitoring, run control, and documentation search.
    6
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    An MCP server that interacts with the ClinicalTrials.gov API v2 to perform drug safety assessments and adverse event comparisons. It enables users to search for clinical trials, retrieve detailed study information, and analyze safety profiles across various medications and control groups.
    5
    GPL 3.0
  • A
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    Enables AI assistants to perform quality control analysis on high-throughput sequencing data using FastQC and MultiQC. It supports single-file and batch processing of FASTQ/FASTA files and generates comprehensive, interactive summary reports.
    MIT
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    B
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    Enables AI assistants to look up, search, validate, navigate hierarchies, and expand value sets for SNOMED CT clinical terminology through the Model Context Protocol.
    7
    Apache 2.0
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    MCP server for interacting with Galaxy bioinformatics platform, enabling AI assistants to connect to Galaxy instances, search and execute tools, manage workflows, and access other features.
    37
    MIT
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    Enables interaction with FHIR resources on Google Cloud Healthcare API through a SmartOnFHIR gateway secured by Firebase Auth, providing access to patient data, medical records, and medical research tools like PubMed.
    1
    MIT
  • A
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    quality
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    Enables AI agents to control RELION 5.x cryo-EM structure determination software through natural language, providing 23 tools for the complete single-particle analysis pipeline.
    4
    MIT
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    Enables MCP clients like Claude Desktop to interact with openEHR REST APIs (EHRbase) for creating compositions, managing EHRs, listing templates, and executing AQL queries.
    18
    MIT
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    MCP-native scientific skills for reproducible computational biology and AI-driven drug-discovery workflows. It combines deterministic scientific tools with an MCP server to give AI agents real computational capabilities.
    Apache 2.0
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    MCP server for querying the GWAS Catalog (EBI/NHGRI), a curated catalog of genome-wide association studies. It enables AI agents to search and retrieve study data via natural language or direct tool calls.
    4
    MIT