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maintenanceProvides FHIR Implementation Guide facts via MCP tools, enabling querying of must-support, bindings, constraints, and value-set usage from StructureDefinition artifacts for conformance and testing support.
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"Exploring RAG through defined workspaces" matching MCP servers:
- Flicense-qualityDmaintenanceA RAG-based MCP server for natural language querying of Brazilian healthcare manuals (SIH/SUS, SIA/SUS) and official ordinances. It provides 16 tools for semantic search, regulatory critique analysis, and retrieving data from SIGTAP and CNES.1
- Flicense-qualityDmaintenanceGraphRAG MCP server for querying SNOM CT medical terminology via Neo4j, offering graph_search_concept and graph_get_related tools to search and traverse concepts and relationships.
- AlicenseAqualityDmaintenanceExposes NCBI PubMed as MCP tools for searching literature, fetching abstracts, exploring citation graphs, and finding author publications without requiring an API key.4MIT
- AlicenseAqualityCmaintenanceMCP server for FHIR interoperability, enabling natural language querying and manipulation of clinical data with full CRUD operations, semantic search, and RAG capabilities.13MIT
- FlicenseAqualityDmaintenanceProvides access to EMBL-EBI bioinformatics data including InterPro domains, Pfam families, protein features, and taxonomy through a unified tool.11
- AlicenseAqualityDmaintenanceEnables bioinformatics analysis through natural language conversations with Claude Desktop, automatically generating and executing Python scripts to produce HTML reports and visualizations.3169MIT
- FlicenseAqualityDmaintenanceProvides read/write access to any FHIR-compliant healthcare API with built-in validation, supporting resource management, search operations, and granular permissions through natural language.51
- FlicenseBqualityDmaintenanceA production-ready Model Context Protocol (MCP) server that provides comprehensive access to the BioOntology API for searching, annotating, and exploring over 1,200 biological ontologies.109
- AlicenseCqualityCmaintenanceEnables AI agents to manage veterinary practice data through ezyVet API, including animals, contacts, appointments, consults, invoices, and products.8MIT
- Alicense-qualityAmaintenanceEnables searching and exploring 340 million academic papers from 15+ databases with semantic search, citation graphs, and knowledge graph connections for biomedical entities.1MIT
Bio-MCP BLASTofficial
Alicense-qualityDmaintenanceEnables AI assistants to perform NCBI BLAST sequence similarity searches through natural language, supporting nucleotide and protein searches, custom database creation, and multiple output formats.10MIT- Alicense-qualityDmaintenanceBridge any AI coding assistant directly to GenePattern — run bioinformatics modules, manage cloud jobs, and stream results, all through natural language.2BSD 3-Clause
snowstorm-mcp-serverofficial
Alicense-qualityBmaintenanceEnables AI assistants to look up, search, validate, navigate hierarchies, and expand value sets for SNOMED CT clinical terminology through the Model Context Protocol.7Apache 2.0- Alicense-qualityDmaintenanceEnables molecular generation, optimization, and analysis through NVIDIA MolMIM API. Supports generating drug-like molecules with desired properties, extracting molecular embeddings, and exploring chemical space around seed molecules.MIT
- Alicense-qualityCmaintenanceEnables interaction with FHIR resources on Google Cloud Healthcare API through a SmartOnFHIR gateway secured by Firebase Auth, providing access to patient data, medical records, and medical research tools like PubMed.1MIT
- Alicense-qualityCmaintenanceEnables AI agents to control RELION 5.x cryo-EM structure determination software through natural language, providing 23 tools for the complete single-particle analysis pipeline.2MIT
- Alicense-qualityCmaintenanceEnables AI agents to query the PomBase fission yeast model-organism database for genetic and molecular data through the Pipeworx MCP gateway.4MIT
- Alicense-qualityCmaintenanceProvides a natural language interface for scRNA-Seq analysis using the Scanpy library, supporting operations such as data preprocessing, clustering, and visualization. It enables AI agents and clients to perform complex single-cell transcriptomics workflows through the Model Context Protocol.2BSD 3-Clause
- Alicense-qualityCmaintenanceEnables querying bioRxiv and medRxiv preprints, including metadata, publication status, and submission counts, through natural language or direct tool calls.10MIT
