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  • Fiji MCP Server

    surajinacademia
    A
    license
    A
    quality
    C
    maintenance
    Enables AI agents to control Fiji/ImageJ for microscopy image analysis through natural language commands, supporting operations like image opening, filtering, particle analysis, and automated workflows.
    19
    3
    BSD 3-Clause

  • otie-mcp

    koji
    F
    license
    A
    quality
    C
    maintenance
    MCP server for controlling Opentrons robots (OT-2/Flex) via HTTP API v2 and Python Protocol API, enabling protocol validation, upload and execution, status monitoring, run control, and documentation search.
    6

  • mcp-ClinicalTrial

    Aki894
    A
    license
    B
    quality
    D
    maintenance
    An MCP server that interacts with the ClinicalTrials.gov API v2 to perform drug safety assessments and adverse event comparisons. It enables users to search for clinical trials, retrieve detailed study information, and analyze safety profiles across various medications and control groups.
    5
    GPL 3.0
  • sniff-mcp by Sniffscore

    sniff-mcpofficial

    Sniffscore
    A
    license
    -
    quality
    B
    maintenance
    Agent-callable canine genomics API providing breed-stratified allele frequencies, pathogenicity predictions, and variant-gene-breed-disease knowledge graph for dog DNA.
    MIT
  • Bio-MCP FastQC Server by bio-mcp

    Bio-MCP FastQC Serverofficial

    bio-mcp
    A
    license
    -
    quality
    D
    maintenance
    Enables AI assistants to perform quality control analysis on high-throughput sequencing data using FastQC and MultiQC. It supports single-file and batch processing of FASTQ/FASTA files and generates comprehensive, interactive summary reports.
    MIT
  • snowstorm-mcp-server by IHTSDO

    snowstorm-mcp-serverofficial

    IHTSDO
    A
    license
    -
    quality
    B
    maintenance
    Enables AI assistants to look up, search, validate, navigate hierarchies, and expand value sets for SNOMED CT clinical terminology through the Model Context Protocol.
    7
    Apache 2.0
  • galaxy-mcp by galaxyproject

    galaxy-mcpofficial

    galaxyproject
    A
    license
    -
    quality
    A
    maintenance
    MCP server for interacting with Galaxy bioinformatics platform, enabling AI assistants to connect to Galaxy instances, search and execute tools, manage workflows, and access other features.
    37
    MIT

  • MolMIM MCP Server

    siarhei-fedziukovich
    A
    license
    -
    quality
    D
    maintenance
    Enables molecular generation, optimization, and analysis through NVIDIA MolMIM API. Supports generating drug-like molecules with desired properties, extracting molecular embeddings, and exploring chemical space around seed molecules.
    MIT

  • openEHR MCP Server

    deak-ai
    A
    license
    -
    quality
    D
    maintenance
    Enables MCP clients like Claude Desktop to interact with openEHR REST APIs (EHRbase) for creating compositions, managing EHRs, listing templates, and executing AQL queries.
    18
    MIT

  • SNOMED CT MCP Server

    eigenbau
    A
    license
    -
    quality
    D
    maintenance
    An MCP server that provides SNOMED CT clinical terminology lookup via any FHIR R4 terminology server supporting SNOMED CT and ECL. Offers tools for searching by term, fetching by code, and navigating the concept hierarchy.
    20
    Apache 2.0

  • mcp-pombase

    pipeworx-io
    A
    license
    -
    quality
    C
    maintenance
    Enables AI agents to query the PomBase fission yeast model-organism database for genetic and molecular data through the Pipeworx MCP gateway.
    4
    MIT

  • semblekit

    burrows99
    A
    license
    -
    quality
    B
    maintenance
    MCP server for the Semble practice-management API, enabling AI agents to search for patients, contacts, and users, as well as retrieve patient relationships via read-only tools.
    MIT

  • mcpXL30

    tspspi
    A
    license
    -
    quality
    C
    maintenance
    Enables LLM agents to control a Philips XL30 ESEM microscope by exposing tools for imaging, beam adjustment, and vacuum chamber operations. It features a safety envelope to regulate sensitive parameters like high tension and stage motion.
    BSD 3-Clause