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  • uniprot-link

    berntpopp
    A
    license
    A
    quality
    A
    maintenance
    An MCP server that grounds protein research in the UniProt SPARQL endpoint, providing tools for querying proteins, sequences, variants, diseases, and more via intent-named tools and raw SPARQL.
    15
    MIT

  • hgnc-link

    berntpopp
    A
    license
    A
    quality
    A
    maintenance
    Grounds gene-nomenclature work in the HUGO Gene Nomenclature Committee (HGNC) dataset, enabling resolution of gene symbols and IDs to canonical HGNC identifiers, plus cross-references and batch operations.
    9
    MIT

  • robins-i-mcp

    Black-Swan-Causal-Labs
    A
    license
    A
    quality
    B
    maintenance
    An MCP server implementing the ROBINS-I V2 framework for risk-of-bias assessment in non-randomized studies, with deterministic algorithms and full provenance. It enables users to parse study documents, specify target trial results, answer signalling questions with evidence-bound quotes, and compute or override domain judgements.
    9
    Apache 2.0

  • TransBench

    kayomarz97
    F
    license
    A
    quality
    B
    maintenance
    TransBench is a translational research agent that takes free-text clinical observations, decomposes them into biological axes, generates falsifiable hypotheses grounded in PubMed evidence, and designs reproducible computational experiments with concrete datasets for Claude Science.
    3

  • ChemCP

    scottmreed
    A
    license
    A
    quality
    D
    maintenance
    Renders interactive 2D molecular structure diagrams from SMILES notation and computes molecular properties like molecular weight, LogP, and TPSA, directly in the chat.
    1
    60
    1
    ISC

  • athena-tools

    nous-ehr
    F
    license
    A
    quality
    B
    maintenance
    A Claude Code extension that embeds a senior athenahealth integration engineer in your development workflow, proactively catching data loss bugs and guiding safe DataView queries and API integrations.
    12
    1

  • hpo-link

    berntpopp
    A
    license
    A
    quality
    A
    maintenance
    MCP server that provides tools for querying the Human Phenotype Ontology (HPO) including term lookup, hierarchy exploration, cross-ontology mappings, and gene-phenotype-disease associations, all grounded in a local SQLite database for fast offline lookups.
    17
    MIT

  • plant-genomics-mcp

    musharna
    A
    license
    A
    quality
    A
    maintenance
    ▎ Provides 32 tools for plant-genomics locus lookup across 11 free public backends (Ensembl Plants, Phytozome, UniProtKB, Europe PMC, QuickGO, NCBI BLAST, Gramene, KEGG, STRING-DB, ATTED-II, BAR). Takes a TAIR-style locus plus optional organism and returns gene metadata, functional/pathway annotation, interactions, co-expression, and literature — in single-locus, batch, and cross-source synthesis.
    50
    3
    MIT

  • NPI Registry MCP Server

    eliotk
    A
    license
    A
    quality
    D
    maintenance
    A Model Context Protocol (MCP) server for searching the National Provider Identifier (NPI) registry. This server provides tools to search and retrieve information about healthcare providers and organizations in the United States.
    1
    4
    Python
    MIT

  • Define-XML MCP Server

    defineEditor
    F
    license
    A
    quality
    D
    maintenance
    A TypeScript MCP server for interacting with CDISC Define-XML 2.0 and 2.1 files, enabling users to load, search, and retrieve clinical data metadata including datasets, variables, and codelists. It supports local file processing with document caching and provides responses in both JSON and Markdown formats.
    13

  • phi-guard-mcp

    dcl632
    A
    license
    A
    quality
    B
    maintenance
    MCP server and CLI for detecting, redacting, and auditing PHI in medical text before it is sent to AI agents, with tools for scan, redact, audit, and validate operations.
    4
    MIT

  • mcpanonimohealth

    alexandreumatize
    A
    license
    A
    quality
    A
    maintenance
    MCP server that locally de-identifies health documents, such as prescriptions, reports, images, and PDFs, before use with Codex or Claude Code. It runs OCR and identifier detection on-device and only returns de-identified text to the agent when the automated policy check results in PASS.
    6
    Apache 2.0