"A tool or algorithm to convert code into a tree structure" matching MCP servers:

Searches UniProt by protein name to find accession numbers and retrieves detailed protein structure information from AlphaFold, including direct links to 3D structural predictions.

Enables genomic sequence analysis through the Evo 2 model, supporting DNA sequence scoring, embedding, generation, and variant effect prediction with multiple model checkpoints (7B, 40B, 1B parameters).

Enables variant annotation and effect prediction using the Ensembl VEP API, with support for batch and single queries.

Enables natural-language querying of a mock legacy healthcare database and returns validated FHIR resources (Patient, Observation, Condition).

An open source biomedical research agent that provides LLMs with 28 tools for drug discovery, protein analysis, literature search, medical imaging, omics, and sandbox execution, all running locally via Ollama and MedGemma.

Manages blood pressure readings (create, read, update, delete) via an MCP server, integrable with Open WebUI.

Enables AI assistants to read COVID-19 lateral flow test results from photographs by calling a deployed computer-vision pipeline, returning verdicts like positive or negative with confidence.

Enables AI agents to rank US healthcare organizations for clinical trial site feasibility, predicting patient accrual for a Graves' disease protocol using claims and registry data.

Exposes vaccination-appointment scheduling as standardized MCP tools backed by an in-memory mock backend. Enables agents to list available slots by date and vaccine type, book appointments, check confirmation status, and cancel bookings.

An MCP server that lets an LLM answer a pharmacist's question about drug shortages by normalizing drug names, finding pharmacologic alternatives, and checking their shortage status using public FDA and NLM data.

Enables MCP-compatible clients to act as an AI receptionist for a small medical clinic, handling appointment booking and rescheduling, patient registration, intake, reminders, and FAQ answers.

Enables language models to search biomedical literature, fetch sequences, and follow links across Entrez databases through eleven read-only tools wrapping the nine NCBI Entrez E-utilities. It handles URL building, pacing, redirects, response caps, and API-key redaction so queries can be answered without a browser or scraping.

An MCP server implementing the ROBINS-I V2 framework for risk-of-bias assessment in non-randomized studies, with deterministic algorithms and full provenance. It enables users to parse study documents, specify target trial results, answer signalling questions with evidence-bound quotes, and compute or override domain judgements.

MyChart MCP Server

Verified ICD-10-CM code lookup & validation for AI agents — official descriptions, not guesses.

Enables AI assistants to clean PDB structures and run initial-stage energy relaxation for biomolecular modeling. It provides a structured workflow for preparing structures before production molecular dynamics or coarse-graining pipelines.

TransBench is a translational research agent that takes free-text clinical observations, decomposes them into biological axes, generates falsifiable hypotheses grounded in PubMed evidence, and designs reproducible computational experiments with concrete datasets for Claude Science.

MCP server that reads glucose data from a FreeStyle sensor via the LibreLinkUp API, providing current glucose and history with explicit coverage and gaps.

Enables natural language querying of brain volumes (NIfTI) with a fixed set of tools, returning visualizations and reproducible nilearn code.

SuperGlookoQuery is a Claude Desktop extension (MCPB) that connects to Glooko diabetes device data and exposes it as clinical analysis tools (time in range, GMI, trends, enriched bolus/basal analysis, charting), for any pump/CGM combination Glooko supports rather than one fixed device. It's a fork of Richard Hall's podquery-mcp, reworked to discover each account's own data shape rather than assumi