"Self-hosted MCP server on Proxmox LXC container accessible from AI on a separate PC" matching MCP servers:

• Omics AI MCP Server

  mfiume

  A

  license

  A

  quality

  D

  maintenance

  Enables AI agents to conversationally interact with genomics research networks for data analysis and discovery across multiple Omics AI Explorer platforms. It provides tools for exploring data collections, examining table schemas, and executing SQL queries against datasets like Viral AI and Neuroscience AI.

  Updated a year ago (2025-06-20 02:56 UTC)

  6

  1

  MIT

• Evo2 MCP Server

  not-a-feature

  A

  license

  A

  quality

  C

  maintenance

  Enables genomic sequence analysis through the Evo 2 model, supporting DNA sequence scoring, embedding, generation, and variant effect prediction with multiple model checkpoints (7B, 40B, 1B parameters).

  Updated 4 months ago (2026-04-13 12:36 UTC)

  6

  2

  LGPL 3.0

• Rosetta MCP Server

  Arielbs

  A

  license

  A

  quality

  F

  maintenance

  An MCP server that enables AI coding assistants to interact with Rosetta, PyRosetta, and Biotite for running RosettaScripts, validating XML, translating between Rosetta and Biotite, scoring structures, and querying documentation.

  Updated 4 months ago (2026-04-05 20:48 UTC)

  19

  75

  18

  MIT
• 

  BioContextAI Knowledgebase MCPofficial

  biocontext-ai

  A

  license

  A

  quality

  C

  maintenance

  An MCP server that provides standardized access to biomedical knowledge bases and resources, enabling AI systems to retrieve verified information from sources like bioRxiv, EuropePMC, and various protein/gene databases.

  Updated 7 months ago (2026-01-12 10:25 UTC)

  52

  28

  Apache 2.0

• VEPmcp

  not-a-feature

  A

  license

  A

  quality

  C

  maintenance

  Enables variant annotation and effect prediction using the Ensembl VEP API, with support for batch and single queries.

  Updated a year ago (2025-08-18 11:44 UTC)

  9

  1

  MIT

• PDB MCP Server

  Augmented-Nature

  F

  license

  A

  quality

  F

  maintenance

  PDB MCP Server

  Updated 8 months ago (2025-12-21 10:07 UTC)

  5

  25

• UniProt MCP Server

  TakumiY235

  A

  license

  B

  quality

  D

  maintenance

  Enables AI assistants to access protein information directly from UniProt, allowing retrieval of protein names, functions, sequences, and organism data by accession number.

  Updated 2 months ago (2026-05-29 16:23 UTC)

  2

  14

  MIT

• GTEx MCP Server

  Augmented-Nature

  F

  license

  B

  quality

  D

  maintenance

  Enables AI assistants to query and analyze genomics data from the GTEx Portal through 25 specialized tools for gene expression analysis, eQTL/sQTL associations, and genetic variant lookups across 54 human tissue types.

  Updated 8 months ago (2025-12-21 10:01 UTC)

  25

  3

• ChEMBL MCP Server

  Augmented-Nature

  F

  license

  B

  quality

  D

  maintenance

  ChEMBL MCP Server

  Updated 8 months ago (2025-12-21 10:00 UTC)

  27

  89

• Unofficial PubChem MCP Server

  Augmented-Nature

  F

  license

  B

  quality

  F

  maintenance

  A comprehensive Model Context Protocol server providing access to over 110 million chemical compounds with extensive molecular properties, bioassay data, and chemical informatics tools from the PubChem database.

  Updated 8 months ago (2025-12-21 10:07 UTC)

  30

  46

• anndata-mcp

  biocontext-ai

  A

  license

  B

  quality

  C

  maintenance

  Allows to retrieve information about an AnnData object via MCP using the read_lazy function from anndata.

  Updated 5 months ago (2026-02-27 17:32 UTC)

  3

  7

  MIT

• gnomAD MCP Server

  shukwong

  F

  license

  B

  quality

  D

  maintenance

  Enables AI assistants to query genetic variant data, gene constraints, and population genetics information from the gnomAD (Genome Aggregation Database) through its GraphQL API. Supports searching for genes and variants, retrieving constraint scores, analyzing population frequencies, and accessing genomic coverage data.

  Updated a year ago (2025-08-13 20:36 UTC)

  9

  10
• 

  NGS360 MCP Serverofficial

  NGS360

  F

  license

  C

  quality

  B

  maintenance

  Exposes the NGS360 bioinformatics platform REST API as MCP tools, enabling AI assistants to manage sequencing runs, projects, workflows, and more through natural language.

  Updated 4 days ago (2026-08-06 19:48 UTC)

  82
• 

  Bio-MCP FastQC Serverofficial

  bio-mcp

  A

  license

  -

  quality

  C

  maintenance

  Enables AI assistants to perform quality control analysis on high-throughput sequencing data using FastQC and MultiQC. It supports single-file and batch processing of FASTQ/FASTA files and generates comprehensive, interactive summary reports.

  Updated a year ago (2025-07-10 00:43 UTC)

  MIT
• 

  RNAcentral MCP Serverofficial

  RNAcentral

  A

  license

  -

  quality

  C

  maintenance

  Enables complex searches, sequence mapping, genomic analysis, and metadata retrieval for non-coding RNA sequences from the RNAcentral database.

  Updated 2 months ago (2026-06-06 20:06 UTC)

  MIT

• BWA MCP Server

  bio-mcp

  A

  license

  -

  quality

  D

  maintenance

  Enables AI assistants to perform DNA/RNA sequence alignment using BWA (Burrows-Wheeler Aligner), supporting both short and long read alignment to reference genomes with indexing, BWA-MEM, and BWA-backtrack algorithms.

  Updated a year ago (2025-07-10 00:43 UTC)

  MIT

• PubMed-MCP-Server

  JackKuo666

  A

  license

  -

  quality

  F

  maintenance

  🔍 Enable AI assistants to search, access, and analyze PubMed articles through a simple MCP interface.

  Updated a year ago (2025-05-08 12:45 UTC)

  124

  MIT
• 

  Glygen MCP Serverofficial

  glygener

  F

  license

  -

  quality

  B

  maintenance

  MCP server that enables querying GlyGen for summaries of proteins, glycans, sites, biomarkers, and diseases.

  Updated a month ago (2026-07-15 16:36 UTC)

• PubTator-MCP-Server

  JackKuo666

  A

  license

  -

  quality

  D

  maintenance

  🔍 A biomedical literature annotation and relationship mining server based on PubTator3, providing convenient access through the MCP interface.

  Updated a year ago (2025-03-31 16:46 UTC)

  9

  MIT

• protein-mcp-server

  cyanheads

  A

  license

  -

  quality

  A

  maintenance

  A Model Context Protocol server providing programmatic access to 3D protein structural data from RCSB PDB, PDBe, and UniProt, enabling search, retrieval, comparison, and analysis of protein structures.

  Updated 12 days ago (2026-07-30 18:07 UTC)

  81

  5

  Apache 2.0