"Pi Network" matching MCP servers:

• nucleotide_archive_mcp

  biocontext-ai

  A

  license

  A

  quality

  C

  maintenance

  An MCP server for searching and accessing RNA sequencing datasets from the European Nucleotide Archive (ENA), supporting bulk, single-cell, and spatial transcriptomics with advanced filtering and download capabilities.

  Last updated 2026-02-27

  11

  1

  Apache 2.0
• 

  BioContextAI Knowledgebase MCPofficial

  biocontext-ai

  A

  license

  A

  quality

  C

  maintenance

  An MCP server that provides standardized access to biomedical knowledge bases and resources, enabling AI systems to retrieve verified information from sources like bioRxiv, EuropePMC, and various protein/gene databases.

  Last updated 2026-01-12

  52

  28

  Apache 2.0

• Omics AI MCP Server

  mfiume

  A

  license

  A

  quality

  D

  maintenance

  Enables AI agents to conversationally interact with genomics research networks for data analysis and discovery across multiple Omics AI Explorer platforms. It provides tools for exploring data collections, examining table schemas, and executing SQL queries against datasets like Viral AI and Neuroscience AI.

  Last updated 2025-06-20

  6

  1

  MIT

• STRING-db MCP Server

  Augmented-Nature

  F

  license

  B

  quality

  D

  maintenance

  A comprehensive Model Context Protocol (MCP) server for accessing the STRING protein interaction database. This server provides powerful tools for protein network analysis, functional enrichment, and comparative genomics through the STRING API.

  Last updated 2025-12-21

  6

  4

• STRING-MCP

  MCPmed

  A

  license

  B

  quality

  D

  maintenance

  A Model Context Protocol server that provides tools for interacting with the STRING database to analyze protein-protein interaction networks and functional enrichment. It enables users to map protein identifiers, retrieve interaction data, and generate biological network visualizations through natural language interfaces.

  Last updated 2025-07-28

  11

  3

  BSD 3-Clause

• Bio-OS MCP Server

  GBA-BI

  A

  license

  C

  quality

  B

  maintenance

  Enables workflow management and Docker image building for Bio-OS platform. Supports WDL workflow submission, validation, and monitoring, along with Docker image building and status tracking for bioinformatics workflows.

  Last updated 2026-07-17

  22

  5

  MIT

• anndata-mcp

  biocontext-ai

  A

  license

  -

  quality

  C

  maintenance

  Allows to retrieve information about an AnnData object via MCP using the read_lazy function from anndata.

  Last updated 2026-02-27

  7

  MIT

• Math-Physics-ML MCP System

  andylbrummer

  A

  license

  -

  quality

  C

  maintenance

  Provides GPU-accelerated scientific computing capabilities including symbolic mathematics, quantum wave mechanics simulations, molecular dynamics, and neural network training through four specialized MCP servers.

  Last updated 2026-05-01

  2

  MIT