"How to create charts from data" matching MCP servers:

• OpenGenes MCP Server

  longevity-genie

  A

  license

  B

  quality

  F

  maintenance

  Provides standardized access to aging and longevity research data from the OpenGenes database, enabling AI assistants to query comprehensive biomedical datasets through SQL and structured interfaces.

  Last updated 2025-10-14

  3

  20

  MIT

• UniProt MCP Server

  TakumiY235

  A

  license

  B

  quality

  D

  maintenance

  Enables AI assistants to access protein information directly from UniProt, allowing retrieval of protein names, functions, sequences, and organism data by accession number.

  Last updated 2026-05-29

  2

  13

  MIT

• Unofficial PubChem MCP Server

  Augmented-Nature

  F

  license

  B

  quality

  F

  maintenance

  A comprehensive Model Context Protocol server providing access to over 110 million chemical compounds with extensive molecular properties, bioassay data, and chemical informatics tools from the PubChem database.

  Last updated 2025-12-21

  30

  43

• bertron-mcp

  ber-data

  A

  license

  B

  quality

  D

  maintenance

  MCP server providing access to the BERtron API for aggregating genomic and environmental data from multiple BER data sources, enabling geospatial search and health checks.

  Last updated 2025-09-17

  8

  3

  BSD 3-Clause

• gnomAD MCP Server

  shukwong

  F

  license

  B

  quality

  D

  maintenance

  Enables AI assistants to query genetic variant data, gene constraints, and population genetics information from the gnomAD (Genome Aggregation Database) through its GraphQL API. Supports searching for genes and variants, retrieving constraint scores, analyzing population frequencies, and accessing genomic coverage data.

  Last updated 2025-08-13

  9

  10

• cBioPortal MCP Server

  pickleton89

  A

  license

  C

  quality

  D

  maintenance

  A server that enables AI assistants to interact with cancer genomics data from cBioPortal, allowing users to explore cancer studies, access genomic data, and retrieve mutations and clinical information.

  Last updated 2025-07-21

  17

  5

  MIT
• 

  igvf-portal-mcpofficial

  IGVF-DACC

  A

  license

  -

  quality

  B

  maintenance

  Enables AI agents to search, filter, download files, and generate reports from the IGVF Data Portal using natural language commands.

  Last updated 2026-07-24

  1

  MIT
• 

  reactome-mcpofficial

  reactome

  A

  license

  -

  quality

  F

  maintenance

  Enables AI assistants to search, browse, analyze, and export biological pathway data from Reactome through natural language.

  Last updated 2026-07-01

  5

  Apache 2.0

• mcp-mygene-info

  pipeworx-io

  A

  license

  -

  quality

  C

  maintenance

  MCP server for querying gene annotations, full-text gene search, and species taxonomy via MyGene.info. Enables AI agents to access gene data through natural language questions.

  Last updated 2026-06-02

  15

  MIT

• mcp-ncbi-eutils

  pipeworx-io

  A

  license

  -

  quality

  C

  maintenance

  Connects to NCBI E-utilities for searching, fetching, and linking biological data across Entrez databases.

  Last updated 2026-06-02

  15

  MIT

• BV-BRC MCP Server

  soham-shukla

  A

  license

  -

  quality

  D

  maintenance

  Enables querying and retrieving bacterial and viral genomic data, features, antimicrobial resistance, and epitopes from the BV-BRC API using natural language.

  Last updated 2026-02-09

  MIT

• protein-mcp-server

  cyanheads

  A

  license

  -

  quality

  A

  maintenance

  A Model Context Protocol server providing programmatic access to 3D protein structural data from RCSB PDB, PDBe, and UniProt, enabling search, retrieval, comparison, and analysis of protein structures.

  Last updated 2026-07-03

  212

  5

  Apache 2.0

• mcp-gtex

  pipeworx-io

  A

  license

  -

  quality

  C

  maintenance

  Enables querying GTEx gene expression, eQTL, and tissue data through an MCP gateway.

  Last updated 2026-06-02

  MIT

• BioVis-MCP

  muslus

  A

  license

  -

  quality

  D

  maintenance

  Enables AI assistants to generate publication-quality bioinformatics visualizations (volcano plots, PCA, heatmaps, etc.) directly from raw biological data.

  Last updated 2026-04-07

  MIT

• mcp-myvariant

  pipeworx-io

  A

  license

  -

  quality

  C

  maintenance

  Enables querying metadata from MyVariant.info, a comprehensive variant annotation database, providing dataset statistics, source information, and build versions.

  Last updated 2026-06-08

  7

  MIT

• mcp-bioregistry

  pipeworx-io

  A

  license

  -

  quality

  C

  maintenance

  Provides tools to query and resolve identifiers from the Bioregistry, including prefix metadata, CURIE resolution, and substring search.

  Last updated 2026-06-02

  15

  MIT

• mcp-alphafold

  pipeworx-io

  A

  license

  -

  quality

  C

  maintenance

  Provides access to AlphaFold predicted protein 3D structures from EBI, enabling retrieval of prediction metadata, summaries, annotations, and UniProt data.

  Last updated 2026-06-26

  18

  MIT

• mcp-rcsb-pdb

  pipeworx-io

  A

  license

  -

  quality

  C

  maintenance

  Enables querying and retrieving experimental protein structures from the RCSB Protein Data Bank, including text search, full entry records, polymer entities, ligands, and assemblies.

  Last updated 2026-06-26

  27

  MIT

• ncbi-mcp

  QiGoki

  A

  license

  -

  quality

  D

  maintenance

  A server providing access to NCBI E-utilities API for searching and retrieving data from databases like PubMed, Protein, and Nucleotide.

  Last updated 2026-01-09

  MIT

• expression-atlas

  pipeworx-io

  A

  license

  -

  quality

  C

  maintenance

  Enables querying the EBI Expression Atlas for gene expression data across species and conditions. Part of the Pipeworx gateway, it provides access to baseline and differential expression studies.

  Last updated 2026-06-09

  9

  MIT